miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 11940 0.66 0.593222
Target:  5'- cGCUGCCGAACgacgaaagaccGCCGagCGUCGaaaacgauccgcccgUGCUg -3'
miRNA:   3'- aCGACGGCUUG-----------UGGCa-GCAGU---------------GCGAg -5'
28124 5' -56.4 NC_005887.1 + 423 0.66 0.588784
Target:  5'- cGC-GCCGccCGCUGUUGcUGCGCUCg -3'
miRNA:   3'- aCGaCGGCuuGUGGCAGCaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 1536 0.66 0.588784
Target:  5'- cUGCUGUCGAcgACCG-CGaaggaCugGCUCg -3'
miRNA:   3'- -ACGACGGCUugUGGCaGCa----GugCGAG- -5'
28124 5' -56.4 NC_005887.1 + 29415 0.66 0.588784
Target:  5'- gGCUGCCGggUucuCCG-CGUaC-CGCUa -3'
miRNA:   3'- aCGACGGCuuGu--GGCaGCA-GuGCGAg -5'
28124 5' -56.4 NC_005887.1 + 13138 0.66 0.577718
Target:  5'- aGCgUGCCGGGCcUCGUC-UCGuCGCUUg -3'
miRNA:   3'- aCG-ACGGCUUGuGGCAGcAGU-GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 4486 0.66 0.577718
Target:  5'- aGgUGCCGAACGgCGcgCGcaUCGCGCg- -3'
miRNA:   3'- aCgACGGCUUGUgGCa-GC--AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 33983 0.66 0.577718
Target:  5'- aGCa-CCGG-CGCCGUa-UCACGCUCa -3'
miRNA:   3'- aCGacGGCUuGUGGCAgcAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 1301 0.66 0.577718
Target:  5'- cGCgUGCUGAGCGCCG-CGcaGCGCcCg -3'
miRNA:   3'- aCG-ACGGCUUGUGGCaGCagUGCGaG- -5'
28124 5' -56.4 NC_005887.1 + 13498 0.66 0.577718
Target:  5'- gUGCUGagCGGuGCGCCGcUCGUCGCaGCa- -3'
miRNA:   3'- -ACGACg-GCU-UGUGGC-AGCAGUG-CGag -5'
28124 5' -56.4 NC_005887.1 + 31012 0.66 0.566698
Target:  5'- cGCgggcGCCGAcauCACCGcCGagCGCGCUg -3'
miRNA:   3'- aCGa---CGGCUu--GUGGCaGCa-GUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 15597 0.66 0.566698
Target:  5'- aGCUGagaCGcAGCGCaCGggCGUCGCGCa- -3'
miRNA:   3'- aCGACg--GC-UUGUG-GCa-GCAGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 11124 0.66 0.566698
Target:  5'- aGCUGgCCGAgGCGCCGUgGcgGCGCa- -3'
miRNA:   3'- aCGAC-GGCU-UGUGGCAgCagUGCGag -5'
28124 5' -56.4 NC_005887.1 + 22975 0.66 0.566698
Target:  5'- aGCUGCgCGAGCAUgGcgCGUUGcCGCUg -3'
miRNA:   3'- aCGACG-GCUUGUGgCa-GCAGU-GCGAg -5'
28124 5' -56.4 NC_005887.1 + 40991 0.66 0.566698
Target:  5'- cGUUGCCGAAC-UCGgugCG-CGCGCg- -3'
miRNA:   3'- aCGACGGCUUGuGGCa--GCaGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 7337 0.66 0.566698
Target:  5'- gGCgGCCGGG-GCCGaUGUCGCGgUCg -3'
miRNA:   3'- aCGaCGGCUUgUGGCaGCAGUGCgAG- -5'
28124 5' -56.4 NC_005887.1 + 23308 0.66 0.566698
Target:  5'- uUGCgcGCCGAcCGCCGcCGcUCGCGUg- -3'
miRNA:   3'- -ACGa-CGGCUuGUGGCaGC-AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 12321 0.66 0.565599
Target:  5'- cGCUGCagcucagCGAACugCGUaCGU--CGCUCg -3'
miRNA:   3'- aCGACG-------GCUUGugGCA-GCAguGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 36098 0.66 0.555733
Target:  5'- uUGCgccucGCCG-GCGCCGagGUgACGCUg -3'
miRNA:   3'- -ACGa----CGGCuUGUGGCagCAgUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 28285 0.66 0.54483
Target:  5'- gGCacGCCGAGCGCgcgcagCGUCGUgGCGaCUUg -3'
miRNA:   3'- aCGa-CGGCUUGUG------GCAGCAgUGC-GAG- -5'
28124 5' -56.4 NC_005887.1 + 19316 0.66 0.54483
Target:  5'- ---cGUCGAAgACCGUCGagaagGCGCUCg -3'
miRNA:   3'- acgaCGGCUUgUGGCAGCag---UGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.