miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 7209 0.66 0.396063
Target:  5'- aUGGguUCGGagaAGUUgaaCGGCGcCGCAGCGCc -3'
miRNA:   3'- -ACU--AGUCg--UCGA---GCCGC-GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 40115 0.66 0.396063
Target:  5'- cGAgccgCAGgacgccuaCAGCgugCGGUGCGCGcuGCGCGc -3'
miRNA:   3'- aCUa---GUC--------GUCGa--GCCGCGCGU--CGCGC- -5'
28126 3' -60 NC_005887.1 + 29375 0.66 0.396063
Target:  5'- cGAgCGGCAuGCccUCGGCccaugccgGCGCGGuCGCGa -3'
miRNA:   3'- aCUaGUCGU-CG--AGCCG--------CGCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 5406 0.66 0.396063
Target:  5'- gUGAacCGGCGGg-CGGCGcCGCAGCGa- -3'
miRNA:   3'- -ACUa-GUCGUCgaGCCGC-GCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 37430 0.66 0.396063
Target:  5'- ---cCAGguGCggagUGGaGCGCGGCGCu -3'
miRNA:   3'- acuaGUCguCGa---GCCgCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 38086 0.66 0.396063
Target:  5'- uUGGUCAGU-GCUCGuCGCGCuugccGUGCu -3'
miRNA:   3'- -ACUAGUCGuCGAGCcGCGCGu----CGCGc -5'
28126 3' -60 NC_005887.1 + 12075 0.66 0.396063
Target:  5'- aGGUCGGCAcgucGCUCGGUcaggucaccgacGUGCuggccGCGCa -3'
miRNA:   3'- aCUAGUCGU----CGAGCCG------------CGCGu----CGCGc -5'
28126 3' -60 NC_005887.1 + 815 0.66 0.396063
Target:  5'- cGAUCaacAGCcauGCUCGcGCGauCGCGGcCGCGa -3'
miRNA:   3'- aCUAG---UCGu--CGAGC-CGC--GCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 41723 0.66 0.396063
Target:  5'- aUGAcgGGCGGCgauccgauccCGGCGCGCGG-GCu -3'
miRNA:   3'- -ACUagUCGUCGa---------GCCGCGCGUCgCGc -5'
28126 3' -60 NC_005887.1 + 30688 0.66 0.396063
Target:  5'- cGAUcCGGaucuGC-CGGaCGCGCuGCGCGa -3'
miRNA:   3'- aCUA-GUCgu--CGaGCC-GCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 10384 0.66 0.387039
Target:  5'- cGAUU-GCGGCUCGucauCcUGCAGCGCGg -3'
miRNA:   3'- aCUAGuCGUCGAGCc---GcGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 3152 0.66 0.387039
Target:  5'- --uUCAuGCGGCcguggUCGGCGUuCAGCGCc -3'
miRNA:   3'- acuAGU-CGUCG-----AGCCGCGcGUCGCGc -5'
28126 3' -60 NC_005887.1 + 11809 0.66 0.387039
Target:  5'- gUGAUCAuGCuGUugcgugcauUCGuGCGCGCcguGCGCGc -3'
miRNA:   3'- -ACUAGU-CGuCG---------AGC-CGCGCGu--CGCGC- -5'
28126 3' -60 NC_005887.1 + 15586 0.66 0.386145
Target:  5'- cUGAUCGccgaagcugagacGCAGCgcaCGGgcguCGCGCAGCagGCGg -3'
miRNA:   3'- -ACUAGU-------------CGUCGa--GCC----GCGCGUCG--CGC- -5'
28126 3' -60 NC_005887.1 + 17019 0.66 0.378152
Target:  5'- aGAgcaAGguGCUUGGCaacggaucggauGCGCAGCgGCa -3'
miRNA:   3'- aCUag-UCguCGAGCCG------------CGCGUCG-CGc -5'
28126 3' -60 NC_005887.1 + 33944 0.66 0.378152
Target:  5'- cGA-CGGC-GCUCGGCgagcacgucgcGUGCGGCGUc -3'
miRNA:   3'- aCUaGUCGuCGAGCCG-----------CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 41454 0.66 0.378152
Target:  5'- -----cGCuGCUCGGCaCGCcGCGCGa -3'
miRNA:   3'- acuaguCGuCGAGCCGcGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 30038 0.66 0.378151
Target:  5'- cGA-CAGCAuccGCgCGGCGguguuCGCGGCGCu -3'
miRNA:   3'- aCUaGUCGU---CGaGCCGC-----GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 12089 0.66 0.378151
Target:  5'- cGA-CGGUuGCgagCGGCGUGCGuGCGCc -3'
miRNA:   3'- aCUaGUCGuCGa--GCCGCGCGU-CGCGc -5'
28126 3' -60 NC_005887.1 + 27670 0.66 0.37727
Target:  5'- gGuAUCAGCGccuucgacacgacGCUcgaCGGCGCGCucGCGCu -3'
miRNA:   3'- aC-UAGUCGU-------------CGA---GCCGCGCGu-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.