miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 3' -51.8 NC_005887.1 + 29881 0.66 0.832969
Target:  5'- uGGCGCCGCGCAcacccGCAGacuucCAGCUAc -3'
miRNA:   3'- gUCGUGGCGCGUu----UGUUgca--GUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 14391 0.66 0.832969
Target:  5'- uCGGCGCgCGCGCGuACGaccuguccgacACGUUcaAGCCGg -3'
miRNA:   3'- -GUCGUG-GCGCGUuUGU-----------UGCAG--UUGGU- -5'
28128 3' -51.8 NC_005887.1 + 28261 0.66 0.832969
Target:  5'- -cGCGCgGCGCugauGCGGCGcaCAGCCc -3'
miRNA:   3'- guCGUGgCGCGuu--UGUUGCa-GUUGGu -5'
28128 3' -51.8 NC_005887.1 + 41497 0.66 0.832969
Target:  5'- uGGCACCgGCuCGAACGGCaaGUCGACg- -3'
miRNA:   3'- gUCGUGG-CGcGUUUGUUG--CAGUUGgu -5'
28128 3' -51.8 NC_005887.1 + 35939 0.66 0.832969
Target:  5'- gGGCGCgGCGUc-GCggUGUCuGCCGa -3'
miRNA:   3'- gUCGUGgCGCGuuUGuuGCAGuUGGU- -5'
28128 3' -51.8 NC_005887.1 + 3072 0.66 0.832969
Target:  5'- gCGGCGCUGgcCGCAGGCG-CGUUGACgGa -3'
miRNA:   3'- -GUCGUGGC--GCGUUUGUuGCAGUUGgU- -5'
28128 3' -51.8 NC_005887.1 + 11721 0.66 0.832028
Target:  5'- gCAGCcccugauACCGCGUcuGCAacGCGUCGAgCu -3'
miRNA:   3'- -GUCG-------UGGCGCGuuUGU--UGCAGUUgGu -5'
28128 3' -51.8 NC_005887.1 + 882 0.66 0.823452
Target:  5'- -cGCGCCGC-CGGACGA-GUCAGgCGg -3'
miRNA:   3'- guCGUGGCGcGUUUGUUgCAGUUgGU- -5'
28128 3' -51.8 NC_005887.1 + 26645 0.66 0.823452
Target:  5'- aCGGCGCCGUcuacaaGCAggagGACGACGgCAGCg- -3'
miRNA:   3'- -GUCGUGGCG------CGU----UUGUUGCaGUUGgu -5'
28128 3' -51.8 NC_005887.1 + 17131 0.66 0.823452
Target:  5'- gAGCAgCG-GCAuGACGGCGUCcGCCc -3'
miRNA:   3'- gUCGUgGCgCGU-UUGUUGCAGuUGGu -5'
28128 3' -51.8 NC_005887.1 + 42408 0.66 0.823452
Target:  5'- uCGGCcCCGCGCcaacAAACAACGUgCAAa-- -3'
miRNA:   3'- -GUCGuGGCGCG----UUUGUUGCA-GUUggu -5'
28128 3' -51.8 NC_005887.1 + 29502 0.66 0.823452
Target:  5'- aAGCGCCuGaCGCcGACGACuacUCGGCCGa -3'
miRNA:   3'- gUCGUGG-C-GCGuUUGUUGc--AGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 21590 0.66 0.823452
Target:  5'- cCGGCAUCGUcgGCAcgaccacgaacGAUAACGcaUCAGCCGg -3'
miRNA:   3'- -GUCGUGGCG--CGU-----------UUGUUGC--AGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 37349 0.66 0.823452
Target:  5'- uCGGuCGCCGCauccuGCuuuuuuGCAGCGUCGGCUu -3'
miRNA:   3'- -GUC-GUGGCG-----CGuu----UGUUGCAGUUGGu -5'
28128 3' -51.8 NC_005887.1 + 9358 0.66 0.813714
Target:  5'- uCGGUGCC-CGUAAccuGCGGCGUCGccguGCCGa -3'
miRNA:   3'- -GUCGUGGcGCGUU---UGUUGCAGU----UGGU- -5'
28128 3' -51.8 NC_005887.1 + 39877 0.66 0.813714
Target:  5'- gAGCGCCucGCGCAucacgugaAugGUgGACCAg -3'
miRNA:   3'- gUCGUGG--CGCGUuug-----UugCAgUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 29974 0.66 0.813714
Target:  5'- aCAcCGCCGCGCGGAUGcUGUCGAgguCCAu -3'
miRNA:   3'- -GUcGUGGCGCGUUUGUuGCAGUU---GGU- -5'
28128 3' -51.8 NC_005887.1 + 17053 0.66 0.813714
Target:  5'- gCGGCACgcuUGgGCGGACGcCGUCAuGCCGc -3'
miRNA:   3'- -GUCGUG---GCgCGUUUGUuGCAGU-UGGU- -5'
28128 3' -51.8 NC_005887.1 + 15112 0.66 0.813714
Target:  5'- gAGaACCuGCGCAAguACGGCGUCAcggACCc -3'
miRNA:   3'- gUCgUGG-CGCGUU--UGUUGCAGU---UGGu -5'
28128 3' -51.8 NC_005887.1 + 31562 0.66 0.813714
Target:  5'- -cGCGCCGCGCGcgcGGCAAuCGgUGACUAc -3'
miRNA:   3'- guCGUGGCGCGU---UUGUU-GCaGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.