miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 27344 0.66 0.749861
Target:  5'- uGCGCCACGcgCaGCGGc-GCGcagacgagcGUCGGc -3'
miRNA:   3'- gCGCGGUGCuaG-CGCUuaCGC---------UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14876 0.66 0.749861
Target:  5'- aGCGUCGCGGcCGCcAGauUGAUCGGg -3'
miRNA:   3'- gCGCGGUGCUaGCGcUUacGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 18036 0.66 0.749861
Target:  5'- gCGCGCCggacugACGGcCGaCGAuuggGCGAUCGu -3'
miRNA:   3'- -GCGCGG------UGCUaGC-GCUua--CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 17922 0.66 0.749861
Target:  5'- gGC-CCACGucGUCGCGAG-GUuGUCGGu -3'
miRNA:   3'- gCGcGGUGC--UAGCGCUUaCGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 2312 0.66 0.746723
Target:  5'- gCGCGcCCAUGcucGUCGCGAcgacuuccgaccggAUGCGccagccgcccAUCGGu -3'
miRNA:   3'- -GCGC-GGUGC---UAGCGCU--------------UACGC----------UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 36913 0.66 0.73936
Target:  5'- gCGCGUCGCGAUCcaGCGcaagGCuGUCGa -3'
miRNA:   3'- -GCGCGGUGCUAG--CGCuua-CGcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 22620 0.66 0.73936
Target:  5'- aGCGUCucgggcauguCGAUCGCGGAcggcaUGCGcagCGGc -3'
miRNA:   3'- gCGCGGu---------GCUAGCGCUU-----ACGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 23187 0.66 0.73936
Target:  5'- uCGCGCuCGCGAUCaCGGccGgGggCGGc -3'
miRNA:   3'- -GCGCG-GUGCUAGcGCUuaCgCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 40579 0.66 0.72875
Target:  5'- gCGCGCCGCG-UgGUGGAUGcCGAa--- -3'
miRNA:   3'- -GCGCGGUGCuAgCGCUUAC-GCUagcc -5'
28131 5' -54.5 NC_005887.1 + 16582 0.66 0.72875
Target:  5'- gGCGCCgGCG---GCGAc-GCGAUCGGc -3'
miRNA:   3'- gCGCGG-UGCuagCGCUuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 8932 0.66 0.72875
Target:  5'- gGCGUCGCGAUCuCGAcggGCGcgcCGGc -3'
miRNA:   3'- gCGCGGUGCUAGcGCUua-CGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 18380 0.66 0.72875
Target:  5'- gCGCGCCgGCGcUCGCGAAccCGAU-GGc -3'
miRNA:   3'- -GCGCGG-UGCuAGCGCUUacGCUAgCC- -5'
28131 5' -54.5 NC_005887.1 + 17291 0.66 0.72875
Target:  5'- gGCGCCGCGcgCGCaAAcGcCGGuUCGGc -3'
miRNA:   3'- gCGCGGUGCuaGCGcUUaC-GCU-AGCC- -5'
28131 5' -54.5 NC_005887.1 + 32457 0.66 0.72875
Target:  5'- gCGCaGCCACug-CGCGGcGUGCgGAUCGa -3'
miRNA:   3'- -GCG-CGGUGcuaGCGCU-UACG-CUAGCc -5'
28131 5' -54.5 NC_005887.1 + 18464 0.66 0.722336
Target:  5'- gGCGCCGCGGcguaggccaucggguUCGCGA--GCGc-CGGc -3'
miRNA:   3'- gCGCGGUGCU---------------AGCGCUuaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 22950 0.66 0.718042
Target:  5'- uGCGCCACcaGcgCGCGAGgaucugauaGCGGcCGGc -3'
miRNA:   3'- gCGCGGUG--CuaGCGCUUa--------CGCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 6824 0.66 0.716966
Target:  5'- gGCGCUACGuggCGCGggUcugcaacaucgacGUG-UCGGa -3'
miRNA:   3'- gCGCGGUGCua-GCGCuuA-------------CGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 24260 0.66 0.707247
Target:  5'- aGCaGCCACGGcgagUCGcCGGAUagcGCGAUCa- -3'
miRNA:   3'- gCG-CGGUGCU----AGC-GCUUA---CGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 6881 0.66 0.707247
Target:  5'- cCGCGCCACGuagcgccaGUCGCGca-GCGugaGGc -3'
miRNA:   3'- -GCGCGGUGC--------UAGCGCuuaCGCuagCC- -5'
28131 5' -54.5 NC_005887.1 + 10603 0.66 0.696378
Target:  5'- gCGCGUCACGAacaUCGCGAcacGCuucucgCGGa -3'
miRNA:   3'- -GCGCGGUGCU---AGCGCUua-CGcua---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.