miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 18262 0.66 0.807097
Target:  5'- gUCAcgGGCGAGCUGAAaaaGUCGUucaUGCa -3'
miRNA:   3'- -AGUugCCGUUCGGCUUg--UAGCA---GCGc -5'
28133 3' -52.8 NC_005887.1 + 13493 0.66 0.807096
Target:  5'- -gAGCGGUgcGCCGc---UCGUCGCa -3'
miRNA:   3'- agUUGCCGuuCGGCuuguAGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 12539 0.66 0.807096
Target:  5'- aUCAGC-GCGAGCUGAGaagCG-CGCGu -3'
miRNA:   3'- -AGUUGcCGUUCGGCUUguaGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 17663 0.66 0.807096
Target:  5'- aUCuuGCGcGCGAGCgcgggauugaCGGGCGuguUCGUCGCGc -3'
miRNA:   3'- -AGu-UGC-CGUUCG----------GCUUGU---AGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 32047 0.66 0.805134
Target:  5'- aCAGCGGCAuuGGCCGAGaagggagUGCGu -3'
miRNA:   3'- aGUUGCCGU--UCGGCUUguagca-GCGC- -5'
28133 3' -52.8 NC_005887.1 + 31141 0.66 0.801188
Target:  5'- ----gGGCAGGCCGugcGCAUacgccugcaccaucgUGUCGCGc -3'
miRNA:   3'- aguugCCGUUCGGCu--UGUA---------------GCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 29419 0.66 0.797211
Target:  5'- cUCGACaGCucgucGGCCGAguaGUCGUCgGCGu -3'
miRNA:   3'- -AGUUGcCGu----UCGGCUug-UAGCAG-CGC- -5'
28133 3' -52.8 NC_005887.1 + 26276 0.66 0.797211
Target:  5'- cCAGCuGCAGGCCGGcCAcCGcCGCc -3'
miRNA:   3'- aGUUGcCGUUCGGCUuGUaGCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 2514 0.66 0.796212
Target:  5'- gUCGACGGC--GCCGuAGCGcgcgaggugucauUCGUCgGCGc -3'
miRNA:   3'- -AGUUGCCGuuCGGC-UUGU-------------AGCAG-CGC- -5'
28133 3' -52.8 NC_005887.1 + 17775 0.66 0.791191
Target:  5'- -gAACGGCAccuuguuguAGCCGGccgucacgaACAUCGUgccgacgucgccaagCGCGg -3'
miRNA:   3'- agUUGCCGU---------UCGGCU---------UGUAGCA---------------GCGC- -5'
28133 3' -52.8 NC_005887.1 + 13932 0.66 0.787142
Target:  5'- gUCGACGG--GGUCGAAguUCGUCaCGg -3'
miRNA:   3'- -AGUUGCCguUCGGCUUguAGCAGcGC- -5'
28133 3' -52.8 NC_005887.1 + 41509 0.66 0.787142
Target:  5'- -gAACGGCAAGUCGAcgguGC-UCGgcaagaucCGCGa -3'
miRNA:   3'- agUUGCCGUUCGGCU----UGuAGCa-------GCGC- -5'
28133 3' -52.8 NC_005887.1 + 6528 0.66 0.776902
Target:  5'- -uGACGGCAucgcccccGCCGAAUucacggggcuGUCGcCGCGc -3'
miRNA:   3'- agUUGCCGUu-------CGGCUUG----------UAGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 13631 0.66 0.776902
Target:  5'- gCGGCGGCcgcacucAGCCGAGCAgcacCGaCGUGc -3'
miRNA:   3'- aGUUGCCGu------UCGGCUUGUa---GCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 26982 0.66 0.776902
Target:  5'- gUCGACGGC-GGCC-AGCGacUCGggCGCa -3'
miRNA:   3'- -AGUUGCCGuUCGGcUUGU--AGCa-GCGc -5'
28133 3' -52.8 NC_005887.1 + 35472 0.66 0.776902
Target:  5'- cUCGugGGCGaaGGCCGuGCG-CGggCGCa -3'
miRNA:   3'- -AGUugCCGU--UCGGCuUGUaGCa-GCGc -5'
28133 3' -52.8 NC_005887.1 + 39088 0.66 0.776902
Target:  5'- cUCcGCaGCAAGCCGc-CGUCGacugCGCGg -3'
miRNA:   3'- -AGuUGcCGUUCGGCuuGUAGCa---GCGC- -5'
28133 3' -52.8 NC_005887.1 + 11183 0.66 0.776902
Target:  5'- gCGAUcGCAugGGCUGAACAucuaggcuUCGUCGCc -3'
miRNA:   3'- aGUUGcCGU--UCGGCUUGU--------AGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 32425 0.66 0.776902
Target:  5'- cCGGCGGCGauguGGCCGGcgGCgAUCagGUUGCGc -3'
miRNA:   3'- aGUUGCCGU----UCGGCU--UG-UAG--CAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 24990 0.66 0.776902
Target:  5'- gUCGG-GGUAGuuGCCGAGCGUCagcUCGCGc -3'
miRNA:   3'- -AGUUgCCGUU--CGGCUUGUAGc--AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.