miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 42089 0.67 0.31492
Target:  5'- gUCGCGuggGGCGCGauGCCG-CGUCGACGAa -3'
miRNA:   3'- -GGCGU---UCGCGUc-CGGCuGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 42058 0.72 0.151789
Target:  5'- aCGUggGcCGCAGGCCGugcUGCUGAUAGg -3'
miRNA:   3'- gGCGuuC-GCGUCCGGCu--GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 41697 0.68 0.299068
Target:  5'- gCCGCGcAGaCGCagcagauccucacGGGCCG-CGCCGGCc- -3'
miRNA:   3'- -GGCGU-UC-GCG-------------UCCGGCuGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 41604 0.66 0.408089
Target:  5'- gCC-CAGGUGCGgcGGCCGGCGCggccCGugAGg -3'
miRNA:   3'- -GGcGUUCGCGU--CCGGCUGCG----GCugUU- -5'
28134 5' -60 NC_005887.1 + 41337 0.74 0.118388
Target:  5'- cCCGU--GCGCAGGUCGACggcgccauuGCCGACGc -3'
miRNA:   3'- -GGCGuuCGCGUCCGGCUG---------CGGCUGUu -5'
28134 5' -60 NC_005887.1 + 41037 0.68 0.299809
Target:  5'- gCCGCGcGGUGCAGGUCGA-GCuCGAgAAc -3'
miRNA:   3'- -GGCGU-UCGCGUCCGGCUgCG-GCUgUU- -5'
28134 5' -60 NC_005887.1 + 40965 0.67 0.33784
Target:  5'- aCCGCuucGGCGCGGGCCuGAUGuacgugcCCGAg-- -3'
miRNA:   3'- -GGCGu--UCGCGUCCGG-CUGC-------GGCUguu -5'
28134 5' -60 NC_005887.1 + 40692 0.68 0.278205
Target:  5'- gCGCGcGCGCAcGGCUGGCaggaGCCGAuCGAa -3'
miRNA:   3'- gGCGUuCGCGU-CCGGCUG----CGGCU-GUU- -5'
28134 5' -60 NC_005887.1 + 40427 0.67 0.330599
Target:  5'- gCGCGacGGCgGCAcGGCCG-CGCuCGACGg -3'
miRNA:   3'- gGCGU--UCG-CGU-CCGGCuGCG-GCUGUu -5'
28134 5' -60 NC_005887.1 + 40355 0.68 0.307294
Target:  5'- gCCGuCGAGCGC-GGCCG-UGCCGcucgucgcgcGCGAg -3'
miRNA:   3'- -GGC-GUUCGCGuCCGGCuGCGGC----------UGUU- -5'
28134 5' -60 NC_005887.1 + 40110 0.66 0.381022
Target:  5'- aCgGUAucgGGCGUAGGCCGGcCGCCu-CGAg -3'
miRNA:   3'- -GgCGU---UCGCGUCCGGCU-GCGGcuGUU- -5'
28134 5' -60 NC_005887.1 + 39816 0.66 0.398934
Target:  5'- uUCGCAcugcuggauaaAGCGCgacGGGCCGcCGUCGcACAu -3'
miRNA:   3'- -GGCGU-----------UCGCG---UCCGGCuGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 37515 0.69 0.232643
Target:  5'- aCUGCAAaccGCGCAGGCaaGCGCCG-CGc -3'
miRNA:   3'- -GGCGUU---CGCGUCCGgcUGCGGCuGUu -5'
28134 5' -60 NC_005887.1 + 37454 0.7 0.197165
Target:  5'- aCCGCGcAGCGCcagcugaaggagaaGGaGCCGACGCUG-CAAa -3'
miRNA:   3'- -GGCGU-UCGCG--------------UC-CGGCUGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 37125 0.7 0.206245
Target:  5'- gCCGUcAGCGagaAGGCCGgcaagaaggggcucaGCGCCGACc- -3'
miRNA:   3'- -GGCGuUCGCg--UCCGGC---------------UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 37004 0.69 0.244982
Target:  5'- -aGCAcGCGCAGGCCGuACGCgaACAc -3'
miRNA:   3'- ggCGUuCGCGUCCGGC-UGCGgcUGUu -5'
28134 5' -60 NC_005887.1 + 36974 0.75 0.097283
Target:  5'- uCgGCGucGCGCGGGUCGAgcuCGCCGGCGAg -3'
miRNA:   3'- -GgCGUu-CGCGUCCGGCU---GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 36306 0.69 0.238746
Target:  5'- gCCGaucuGCGCGgcGGUCGACGCCGcGCAc -3'
miRNA:   3'- -GGCguu-CGCGU--CCGGCUGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 36117 0.73 0.139798
Target:  5'- gCGCGAGCGCgucgAGGCCuugcgccuCGCCGGCGc -3'
miRNA:   3'- gGCGUUCGCG----UCCGGcu------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 35907 0.67 0.322688
Target:  5'- uCCGCAGGCGaugaucuacGCCGACG-CGGCGc -3'
miRNA:   3'- -GGCGUUCGCguc------CGGCUGCgGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.