miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 13385 0.66 0.398934
Target:  5'- uCCGCGA-UGC-GGCCGGCGuuGcCGAa -3'
miRNA:   3'- -GGCGUUcGCGuCCGGCUGCggCuGUU- -5'
28134 5' -60 NC_005887.1 + 28117 0.67 0.346846
Target:  5'- -gGguGGCGCAGcGCCugcucgaucACGCCGACGc -3'
miRNA:   3'- ggCguUCGCGUC-CGGc--------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 24436 0.67 0.330599
Target:  5'- cCUGC-AGCGC-GGCuCGugguucguCGCCGACGAg -3'
miRNA:   3'- -GGCGuUCGCGuCCG-GCu-------GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 25069 0.77 0.065293
Target:  5'- gCCGCcGGCGCGaGCUGACGCuCGGCAAc -3'
miRNA:   3'- -GGCGuUCGCGUcCGGCUGCG-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 4027 0.66 0.381022
Target:  5'- uUCGCGAGCaacgGCGGGUCGacgagcuucugcGCGCCG-CGGa -3'
miRNA:   3'- -GGCGUUCG----CGUCCGGC------------UGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 40110 0.66 0.381022
Target:  5'- aCgGUAucgGGCGUAGGCCGGcCGCCu-CGAg -3'
miRNA:   3'- -GgCGU---UCGCGUCCGGCU-GCGGcuGUU- -5'
28134 5' -60 NC_005887.1 + 7341 0.66 0.363656
Target:  5'- -aGCGGGCgGCcgGGGCCGAUGUCG-CGGu -3'
miRNA:   3'- ggCGUUCG-CG--UCCGGCUGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 24650 0.66 0.363656
Target:  5'- gCCGCGAacccauGCGCAGGUgUGAaGCUGACGg -3'
miRNA:   3'- -GGCGUU------CGCGUCCG-GCUgCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 10997 0.67 0.354341
Target:  5'- gCGCGuaaucgGGCgugaGCAGGCCGgccgacgucaucuGCGCCGGCu- -3'
miRNA:   3'- gGCGU------UCG----CGUCCGGC-------------UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 29002 0.67 0.346846
Target:  5'- aCCGCcAGUGCucGCUGuGCGUCGACGc -3'
miRNA:   3'- -GGCGuUCGCGucCGGC-UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 26880 0.67 0.350163
Target:  5'- gCGCAcGCGCAGGauGAaauucagaaggcgcuCGCCGACu- -3'
miRNA:   3'- gGCGUuCGCGUCCggCU---------------GCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 20749 0.67 0.355181
Target:  5'- aCCGCAuGCGUA-GCCacCGUCGACAAa -3'
miRNA:   3'- -GGCGUuCGCGUcCGGcuGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 1840 0.66 0.398934
Target:  5'- gCCGac-GCGCAGGUCGAgcaUGUCGAgGAu -3'
miRNA:   3'- -GGCguuCGCGUCCGGCU---GCGGCUgUU- -5'
28134 5' -60 NC_005887.1 + 27217 0.67 0.346846
Target:  5'- cCCGCGcccguGGcCGUucGGCCGcgugauCGCCGACGAg -3'
miRNA:   3'- -GGCGU-----UC-GCGu-CCGGCu-----GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 35423 0.66 0.389911
Target:  5'- cCCGCGuGGUGcCGGGCgugaagcuCGugGCCGGCc- -3'
miRNA:   3'- -GGCGU-UCGC-GUCCG--------GCugCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 5138 0.67 0.355181
Target:  5'- cCCGCAcgGGUauGCGGGCUGAUcuuCCGGCGc -3'
miRNA:   3'- -GGCGU--UCG--CGUCCGGCUGc--GGCUGUu -5'
28134 5' -60 NC_005887.1 + 22867 0.67 0.346846
Target:  5'- gCCGCGuAGCucgugaacaacaGC-GGCCG-CGCCGGCGu -3'
miRNA:   3'- -GGCGU-UCG------------CGuCCGGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 31203 0.67 0.338652
Target:  5'- gCGUAuGCGCAcGGCCuGC-CCGGCAAg -3'
miRNA:   3'- gGCGUuCGCGU-CCGGcUGcGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 2562 0.66 0.389911
Target:  5'- gUGCAcGaGCAGGCCGGgcuCGCCGuCGAu -3'
miRNA:   3'- gGCGUuCgCGUCCGGCU---GCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 33167 0.66 0.363656
Target:  5'- aCGCAAGC-CGGG-CGACcCCGACu- -3'
miRNA:   3'- gGCGUUCGcGUCCgGCUGcGGCUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.