miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 3' -49.7 NC_005887.1 + 41832 0.7 0.742156
Target:  5'- -aGGGCGAcgACCaCGCGAuCugGCGGc -3'
miRNA:   3'- caCUUGUUaaUGGaGCGCU-GugCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41422 0.72 0.66302
Target:  5'- -cGAACGcUUcCCg-GCGGCGCGCGGa -3'
miRNA:   3'- caCUUGUuAAuGGagCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41161 0.66 0.921237
Target:  5'- -cGucuGCAGUuccucUGCCUCGUccacgaGCGCGCGGa -3'
miRNA:   3'- caCu--UGUUA-----AUGGAGCGc-----UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41016 0.7 0.763861
Target:  5'- uGUGGACAGgcgucuaCUgGCGcCGCGCGGu -3'
miRNA:   3'- -CACUUGUUaaug---GAgCGCuGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41006 0.67 0.886023
Target:  5'- -cGAGCAugcgcucggcGUUGCCgaacucggUGCG-CGCGCGGu -3'
miRNA:   3'- caCUUGU----------UAAUGGa-------GCGCuGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 40845 0.67 0.908048
Target:  5'- -cGAACcucgACCgccggcUCgGCGGCGCGCGGc -3'
miRNA:   3'- caCUUGuuaaUGG------AG-CGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 40511 0.72 0.616813
Target:  5'- cGUGuucGGCAuccACCaCGCGGCGCGCGGc -3'
miRNA:   3'- -CAC---UUGUuaaUGGaGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 40441 0.68 0.869899
Target:  5'- ---cACGAUUuCCUCGCG-CGCGaCGGc -3'
miRNA:   3'- cacuUGUUAAuGGAGCGCuGUGC-GCC- -5'
28136 3' -49.7 NC_005887.1 + 39875 0.67 0.893658
Target:  5'- cUGAGC----GCCUCGCGcauCACGUGa -3'
miRNA:   3'- cACUUGuuaaUGGAGCGCu--GUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 39760 0.68 0.861425
Target:  5'- aUGAACAAUgagACUcuggUCGCGGCGCucGCGc -3'
miRNA:   3'- cACUUGUUAa--UGG----AGCGCUGUG--CGCc -5'
28136 3' -49.7 NC_005887.1 + 37101 0.75 0.482038
Target:  5'- -cGAGCAca-GCCUCgGCGAuCGCGCGGc -3'
miRNA:   3'- caCUUGUuaaUGGAG-CGCU-GUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 36836 0.67 0.901001
Target:  5'- --cAGCAGUUcgacaGCCuugcgcuggaUCGCGACGCGCGc -3'
miRNA:   3'- cacUUGUUAA-----UGG----------AGCGCUGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 35407 0.72 0.651486
Target:  5'- cGUGaAGCucgugGCCggccgcCGCGGCGCGCGGc -3'
miRNA:   3'- -CAC-UUGuuaa-UGGa-----GCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 34463 0.72 0.659562
Target:  5'- cUGAuuGCAGgccggGCCUCGCGcccggccgccucugAUACGCGGg -3'
miRNA:   3'- cACU--UGUUaa---UGGAGCGC--------------UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 34444 0.67 0.886023
Target:  5'- -gGAGCGGUcGCCUCGaagucgucuuCGuuCGCGCGGc -3'
miRNA:   3'- caCUUGUUAaUGGAGC----------GCu-GUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 33033 0.72 0.639932
Target:  5'- -aGAGCAGUUucgcGCCgCGCGAgaacguauuCGCGCGGu -3'
miRNA:   3'- caCUUGUUAA----UGGaGCGCU---------GUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 32745 0.72 0.651486
Target:  5'- cUGuacGCGGUUGCCgaagCGCGcACGCGCGa -3'
miRNA:   3'- cACu--UGUUAAUGGa---GCGC-UGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 31499 0.67 0.886023
Target:  5'- ----cCGAUUGCCgcgCGCGcgGCGCGGa -3'
miRNA:   3'- cacuuGUUAAUGGa--GCGCugUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 31414 0.65 0.938198
Target:  5'- cUGGACGuggGCCaUCGacgacggcccgguCGGCACGUGGg -3'
miRNA:   3'- cACUUGUuaaUGG-AGC-------------GCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 31301 0.66 0.933209
Target:  5'- -aGAACGGUgGCauguucgaUCGCGucgugcugaaGCACGCGGc -3'
miRNA:   3'- caCUUGUUAaUGg-------AGCGC----------UGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.