miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 5' -57.3 NC_005887.1 + 41728 0.66 0.584399
Target:  5'- gGGCgGCGaUCCGaucccGGCGCgCGGGCu -3'
miRNA:   3'- -CCGgUGCaAGGUgca--CUGCGgGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 28463 0.66 0.584399
Target:  5'- cGGCUGCGacgUgCGCGUGACgacaGCCgCGaAGCc -3'
miRNA:   3'- -CCGGUGCa--AgGUGCACUG----CGG-GC-UCG- -5'
28136 5' -57.3 NC_005887.1 + 25071 0.66 0.584399
Target:  5'- cGGCCGCcgg-CGCGagcUGACGCUCG-GCa -3'
miRNA:   3'- -CCGGUGcaagGUGC---ACUGCGGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 41530 0.66 0.584399
Target:  5'- cGGCaa-GaUCCGCGaGGCGCUCGGcGCg -3'
miRNA:   3'- -CCGgugCaAGGUGCaCUGCGGGCU-CG- -5'
28136 5' -57.3 NC_005887.1 + 31259 0.66 0.573595
Target:  5'- cGCC-CGaaaUCUACGcGcgcAUGCCCGAGCa -3'
miRNA:   3'- cCGGuGCa--AGGUGCaC---UGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 30535 0.66 0.573595
Target:  5'- gGGCCGCGUcgcgcaCCGCcUGuuccaGCCCG-GCa -3'
miRNA:   3'- -CCGGUGCAa-----GGUGcACug---CGGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 15459 0.66 0.573595
Target:  5'- cGCCGCGaugaCCGCGcaccaaGACGCguUCGAGCu -3'
miRNA:   3'- cCGGUGCaa--GGUGCa-----CUGCG--GGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 10080 0.66 0.573595
Target:  5'- aGCCGCaUUCCGuCGUGugGgcggCCCGcGCc -3'
miRNA:   3'- cCGGUGcAAGGU-GCACugC----GGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 16426 0.66 0.572517
Target:  5'- aGGCCgagaucgACGggaucgagaaCCGCGUG-CGCgCGGGCa -3'
miRNA:   3'- -CCGG-------UGCaa--------GGUGCACuGCGgGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 1345 0.66 0.562838
Target:  5'- aGCCGCagg--GCGaGACGCUCGAGCg -3'
miRNA:   3'- cCGGUGcaaggUGCaCUGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 35426 0.66 0.562838
Target:  5'- aGGcCCGCGUggugCCggGCGUGAaGCUCGuGGCc -3'
miRNA:   3'- -CC-GGUGCAa---GG--UGCACUgCGGGC-UCG- -5'
28136 5' -57.3 NC_005887.1 + 1556 0.66 0.556409
Target:  5'- cGGCCGCG--CCGCGcGAgCGCCgcacgccgucggcguCGGGCu -3'
miRNA:   3'- -CCGGUGCaaGGUGCaCU-GCGG---------------GCUCG- -5'
28136 5' -57.3 NC_005887.1 + 34086 0.66 0.552135
Target:  5'- cGUCAcCGUUCUuccagugaGCgGUGACGC-CGAGCg -3'
miRNA:   3'- cCGGU-GCAAGG--------UG-CACUGCGgGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 8437 0.66 0.552135
Target:  5'- cGCCgcaGCGaUCCGCGUcaacgcgaucGAgCGCCCGGcGCa -3'
miRNA:   3'- cCGG---UGCaAGGUGCA----------CU-GCGGGCU-CG- -5'
28136 5' -57.3 NC_005887.1 + 35206 0.66 0.552135
Target:  5'- cGGCCGCccgUC-CGUGGCGCCgGAu- -3'
miRNA:   3'- -CCGGUGcaaGGuGCACUGCGGgCUcg -5'
28136 5' -57.3 NC_005887.1 + 1312 0.66 0.552135
Target:  5'- uGCgACGuUUUCGCGUGcugaGCGCCgCGcAGCg -3'
miRNA:   3'- cCGgUGC-AAGGUGCAC----UGCGG-GC-UCG- -5'
28136 5' -57.3 NC_005887.1 + 15960 0.66 0.541495
Target:  5'- cGGCCA-GcUgCGCGUcGAgCGCaCCGAGCu -3'
miRNA:   3'- -CCGGUgCaAgGUGCA-CU-GCG-GGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 41276 0.66 0.541495
Target:  5'- cGGUCACGgg-CACGacGACGCgCGGGUc -3'
miRNA:   3'- -CCGGUGCaagGUGCa-CUGCGgGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 13533 0.66 0.537258
Target:  5'- cGCCACGaucgcgaaugcgaUCgGCGaugcgcUGcCGCCCGAGCa -3'
miRNA:   3'- cCGGUGCa------------AGgUGC------ACuGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 32540 0.67 0.535144
Target:  5'- cGGCCACGUgugccaggcuuucaCCGCGUucucGCGCCaGuGCg -3'
miRNA:   3'- -CCGGUGCAa-------------GGUGCAc---UGCGGgCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.