miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 2445 0.66 0.288331
Target:  5'- aCACCUCGCUGcGCUA-CGGCGcCGUCGa -3'
miRNA:   3'- gGUGGGGCGGU-UGGUgGCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 30927 0.66 0.288331
Target:  5'- aUCGCCUugUGCCAGCgCGCuCGGCggugaugucgGCGCCc -3'
miRNA:   3'- -GGUGGG--GCGGUUG-GUG-GCCG----------CGCGGc -5'
28138 3' -64 NC_005887.1 + 21016 0.66 0.288331
Target:  5'- -aACCCCGCCGGCUcaacguCCGGUcagGCGaUCGu -3'
miRNA:   3'- ggUGGGGCGGUUGGu-----GGCCG---CGC-GGC- -5'
28138 3' -64 NC_005887.1 + 25092 0.66 0.288331
Target:  5'- gCCGCCgCCGUCGgauuucgcgACCGguuguCCGGCcgagauccaGCGCCGc -3'
miRNA:   3'- -GGUGG-GGCGGU---------UGGU-----GGCCG---------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 34720 0.66 0.288331
Target:  5'- -gAUCCgGaaaCCGGCaaGCCGGCGCGCCu -3'
miRNA:   3'- ggUGGGgC---GGUUGg-UGGCCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 14593 0.66 0.281505
Target:  5'- aCGCgCCGCCGACgGCCG-CGC-CUGc -3'
miRNA:   3'- gGUGgGGCGGUUGgUGGCcGCGcGGC- -5'
28138 3' -64 NC_005887.1 + 17589 0.66 0.281505
Target:  5'- aCACgCCCGUCAAUC-CCGcgcucGCGCGCa- -3'
miRNA:   3'- gGUG-GGGCGGUUGGuGGC-----CGCGCGgc -5'
28138 3' -64 NC_005887.1 + 13754 0.66 0.274808
Target:  5'- gCCGCCCgugGUCGAgaucCCACCcGuCGCGCCGc -3'
miRNA:   3'- -GGUGGGg--CGGUU----GGUGGcC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 22947 0.66 0.26824
Target:  5'- gCCACCagCGCgcgaggaucugaUAGCgGCCGGCG-GCCGu -3'
miRNA:   3'- -GGUGGg-GCG------------GUUGgUGGCCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 4963 0.66 0.26824
Target:  5'- aCACCUcgCGCCGGCCcUCGGCGaccauCGUCGc -3'
miRNA:   3'- gGUGGG--GCGGUUGGuGGCCGC-----GCGGC- -5'
28138 3' -64 NC_005887.1 + 23595 0.66 0.26824
Target:  5'- gUACgCUGCCAGCuCACCcGCGCGUUc -3'
miRNA:   3'- gGUGgGGCGGUUG-GUGGcCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 34372 0.66 0.26824
Target:  5'- gCGCCCCGCguAUCagagugcgGCCgGGCGCGaggcCCGg -3'
miRNA:   3'- gGUGGGGCGguUGG--------UGG-CCGCGC----GGC- -5'
28138 3' -64 NC_005887.1 + 4311 0.66 0.26824
Target:  5'- gCCGaggCCgGCCAGCUGCCGGaCaUGCCGc -3'
miRNA:   3'- -GGUg--GGgCGGUUGGUGGCC-GcGCGGC- -5'
28138 3' -64 NC_005887.1 + 13878 0.66 0.261798
Target:  5'- gCAgUUCGCgAGCUACCGGCucgugcGCGUCGg -3'
miRNA:   3'- gGUgGGGCGgUUGGUGGCCG------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 1474 0.66 0.259891
Target:  5'- -aGCCCgaCGCCGACgGCgugcggcgcucgcgCGGCGCgGCCGu -3'
miRNA:   3'- ggUGGG--GCGGUUGgUG--------------GCCGCG-CGGC- -5'
28138 3' -64 NC_005887.1 + 40654 0.66 0.255484
Target:  5'- -aGCgCgCGCCGAUCACCGGC-CGCa- -3'
miRNA:   3'- ggUGgG-GCGGUUGGUGGCCGcGCGgc -5'
28138 3' -64 NC_005887.1 + 13518 0.66 0.255483
Target:  5'- gCGCgCCCGUCAggaugaacguGCUgAgCGGUGCGCCGc -3'
miRNA:   3'- gGUG-GGGCGGU----------UGG-UgGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 12982 0.66 0.255483
Target:  5'- aCGCgCUCGCgAA--ACCGGCGUGCUGg -3'
miRNA:   3'- gGUG-GGGCGgUUggUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 11180 0.66 0.255483
Target:  5'- gCGCCUCgGCCAGCUucgcgcgcaccaGCCGaUGCGCCa -3'
miRNA:   3'- gGUGGGG-CGGUUGG------------UGGCcGCGCGGc -5'
28138 3' -64 NC_005887.1 + 5013 0.66 0.254236
Target:  5'- cUCACgCCCGCCGaggcgcagaccgaaGCCAacgaaggcacggcaaUGGcCGCGCCGg -3'
miRNA:   3'- -GGUG-GGGCGGU--------------UGGUg--------------GCC-GCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.