miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 14515 0.66 0.443448
Target:  5'- uGGUGguCCGCuUGCagGCGCggCCGuCGg -3'
miRNA:   3'- -CCGCguGGCGcACGa-CGUGaaGGC-GC- -5'
28141 3' -59.4 NC_005887.1 + 5486 0.66 0.443447
Target:  5'- uGGuCGCGCCG-GUcGCUGCGgcgCCGCc -3'
miRNA:   3'- -CC-GCGUGGCgCA-CGACGUgaaGGCGc -5'
28141 3' -59.4 NC_005887.1 + 37400 0.66 0.433846
Target:  5'- uGGCGCugCGCGgucgcgacUGcCUGCACgccaggUGCGg -3'
miRNA:   3'- -CCGCGugGCGC--------AC-GACGUGaag---GCGC- -5'
28141 3' -59.4 NC_005887.1 + 3368 0.66 0.433846
Target:  5'- aGGCGUACCuGCagggagugGUGC-GCACgcuguucgCCGCGc -3'
miRNA:   3'- -CCGCGUGG-CG--------CACGaCGUGaa------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 17692 0.66 0.433845
Target:  5'- cGGCGCugACCGuCGUGC-GCAgcguuuccauCUUgCGCGc -3'
miRNA:   3'- -CCGCG--UGGC-GCACGaCGU----------GAAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 33829 0.66 0.432892
Target:  5'- cGGCaCGCCGCGccagaUGCUcgugaaggccggcGCGCUgauccucgCCGCGa -3'
miRNA:   3'- -CCGcGUGGCGC-----ACGA-------------CGUGAa-------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 8645 0.66 0.424365
Target:  5'- aGCGUcgaacgaaaccuGCUGCgGUGCUGC-CUUCgGCa -3'
miRNA:   3'- cCGCG------------UGGCG-CACGACGuGAAGgCGc -5'
28141 3' -59.4 NC_005887.1 + 11055 0.66 0.424365
Target:  5'- aGGCGUGgacacugauuuCCGCGccGCUGCucaaacgaUUCCGCGu -3'
miRNA:   3'- -CCGCGU-----------GGCGCa-CGACGug------AAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 33460 0.66 0.423424
Target:  5'- -aCGCACCGCGaugagccucauccUGCccgccggcgcgUGCACaUCCGCu -3'
miRNA:   3'- ccGCGUGGCGC-------------ACG-----------ACGUGaAGGCGc -5'
28141 3' -59.4 NC_005887.1 + 33641 0.66 0.41501
Target:  5'- -cCGUAgCGCGcGCUGCGC-UCgGCGa -3'
miRNA:   3'- ccGCGUgGCGCaCGACGUGaAGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 15824 0.66 0.41501
Target:  5'- aGGCGCA--G-GUGCaGCGCUUgCGCGg -3'
miRNA:   3'- -CCGCGUggCgCACGaCGUGAAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 27082 0.66 0.41501
Target:  5'- --gGUGCCGCGcuUGCUGCGCUgguucgacaCGCGc -3'
miRNA:   3'- ccgCGUGGCGC--ACGACGUGAag-------GCGC- -5'
28141 3' -59.4 NC_005887.1 + 14221 0.66 0.41501
Target:  5'- gGGCgGCGCCGCGcUGUucgGCGCggcaUCCGa- -3'
miRNA:   3'- -CCG-CGUGGCGC-ACGa--CGUGa---AGGCgc -5'
28141 3' -59.4 NC_005887.1 + 12785 0.66 0.405782
Target:  5'- aGCGCAuuCUGC-UGCUGCGCgaCCaGCGu -3'
miRNA:   3'- cCGCGU--GGCGcACGACGUGaaGG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 17117 0.66 0.405782
Target:  5'- cGGCGUccGCCcaaGCGUgccGCUGCGCaUCCGa- -3'
miRNA:   3'- -CCGCG--UGG---CGCA---CGACGUGaAGGCgc -5'
28141 3' -59.4 NC_005887.1 + 22874 0.66 0.405782
Target:  5'- cGGaUGCGCCGCGUaGCUcGUgaacaacaGCggCCGCGc -3'
miRNA:   3'- -CC-GCGUGGCGCA-CGA-CG--------UGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 24999 0.66 0.404867
Target:  5'- cGCGCACCGCGUcGCgaucgacaacggUGCcgauccgGCUgCUGCGa -3'
miRNA:   3'- cCGCGUGGCGCA-CG------------ACG-------UGAaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 1234 0.67 0.396685
Target:  5'- gGGCGCugCGCGgcGCUcaGCACgcgaaaacgUCGCa -3'
miRNA:   3'- -CCGCGugGCGCa-CGA--CGUGaa-------GGCGc -5'
28141 3' -59.4 NC_005887.1 + 35282 0.67 0.396685
Target:  5'- aGGCGCAUCGacuuaaGCaGCGCUUCgGCc -3'
miRNA:   3'- -CCGCGUGGCgca---CGaCGUGAAGgCGc -5'
28141 3' -59.4 NC_005887.1 + 2734 0.67 0.396685
Target:  5'- cGCGCACCaG-GUGCuUGUGCUcgcCCGCGc -3'
miRNA:   3'- cCGCGUGG-CgCACG-ACGUGAa--GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.