miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 3' -59.1 NC_005887.1 + 31712 0.65 0.488401
Target:  5'- cGCGAugCUGAcUGGCUgcucUGCCgggauggaaagugGCGGCc -3'
miRNA:   3'- -CGCUugGGCU-ACCGGau--GCGG-------------CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 33613 0.65 0.486383
Target:  5'- cGCGAGCgCGGcgUGGUCUucgaacuucccguaGCGCgCGCuGCg -3'
miRNA:   3'- -CGCUUGgGCU--ACCGGA--------------UGCG-GCGcCG- -5'
28144 3' -59.1 NC_005887.1 + 41953 0.66 0.479356
Target:  5'- gGCGuGCUCGcGUGGU--GCGUgCGCGGCg -3'
miRNA:   3'- -CGCuUGGGC-UACCGgaUGCG-GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 14506 0.66 0.479356
Target:  5'- cGCGGuGCuuGGUGGUCcgcuUGCaGgCGCGGCc -3'
miRNA:   3'- -CGCU-UGggCUACCGG----AUG-CgGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 16938 0.66 0.479356
Target:  5'- uCGuuGCCUGucgaGCCguccGCGCCGCGGUa -3'
miRNA:   3'- cGCu-UGGGCuac-CGGa---UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 30369 0.66 0.479356
Target:  5'- -aGAACgUGAUcGGCCUgacugcgaACGUcgugCGCGGCa -3'
miRNA:   3'- cgCUUGgGCUA-CCGGA--------UGCG----GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 41673 0.66 0.473371
Target:  5'- aCGGGCCgCGccGGCCgccgcaccugggcCGCCGCuGGCc -3'
miRNA:   3'- cGCUUGG-GCuaCCGGau-----------GCGGCG-CCG- -5'
28144 3' -59.1 NC_005887.1 + 13039 0.66 0.469403
Target:  5'- cGCGggUcgCCGcuucGGUCUgguauugcuguaGCGUCGCGGCu -3'
miRNA:   3'- -CGCuuG--GGCua--CCGGA------------UGCGGCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 14595 0.66 0.469403
Target:  5'- uUGAugUCGGUacgcguacGGCCgucgGCGCCGUcgagGGCg -3'
miRNA:   3'- cGCUugGGCUA--------CCGGa---UGCGGCG----CCG- -5'
28144 3' -59.1 NC_005887.1 + 40031 0.66 0.469403
Target:  5'- gGCGcGGCUCGAggcggccGGCCUACGCC-CGa- -3'
miRNA:   3'- -CGC-UUGGGCUa------CCGGAUGCGGcGCcg -5'
28144 3' -59.1 NC_005887.1 + 2844 0.66 0.469403
Target:  5'- aGCGGugcACCCGAcaucCCaAUGCCGCaGGCg -3'
miRNA:   3'- -CGCU---UGGGCUacc-GGaUGCGGCG-CCG- -5'
28144 3' -59.1 NC_005887.1 + 41621 0.66 0.469403
Target:  5'- gGCGcGGCCCGugaGGaucugCUGCGUcugCGCGGCg -3'
miRNA:   3'- -CGC-UUGGGCua-CCg----GAUGCG---GCGCCG- -5'
28144 3' -59.1 NC_005887.1 + 17276 0.66 0.469403
Target:  5'- gGCGAGa-CGucgGGCg-GCGCCGCGcGCg -3'
miRNA:   3'- -CGCUUggGCua-CCGgaUGCGGCGC-CG- -5'
28144 3' -59.1 NC_005887.1 + 958 0.66 0.469403
Target:  5'- uCGAAgCCGA-GGCCgccugacuCGuCCGgCGGCg -3'
miRNA:   3'- cGCUUgGGCUaCCGGau------GC-GGC-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 12625 0.66 0.466437
Target:  5'- uGCGcAugCCGgcGGCCgucgACGCCacguccuugaaguuGuCGGCg -3'
miRNA:   3'- -CGC-UugGGCuaCCGGa---UGCGG--------------C-GCCG- -5'
28144 3' -59.1 NC_005887.1 + 30468 0.66 0.466437
Target:  5'- gGCGAACUCGGcgUGGCgaaguuuucagaggCgACGCCgaGCGGUa -3'
miRNA:   3'- -CGCUUGGGCU--ACCG--------------GaUGCGG--CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 18632 0.66 0.459556
Target:  5'- cGCGAcgagcaugucGCCCGcgaaGCCgGCGCCGCcGCc -3'
miRNA:   3'- -CGCU----------UGGGCuac-CGGaUGCGGCGcCG- -5'
28144 3' -59.1 NC_005887.1 + 21721 0.66 0.459556
Target:  5'- aGCGAcacGCCCGucagauUGGUCgGCGUCG-GGUa -3'
miRNA:   3'- -CGCU---UGGGCu-----ACCGGaUGCGGCgCCG- -5'
28144 3' -59.1 NC_005887.1 + 2614 0.66 0.459556
Target:  5'- gGCGGaagcaguagccGCCCGAcagcGCCuUGCGCagcguGCGGCa -3'
miRNA:   3'- -CGCU-----------UGGGCUac--CGG-AUGCGg----CGCCG- -5'
28144 3' -59.1 NC_005887.1 + 15244 0.66 0.459556
Target:  5'- gGCG-GCCCGAagcaGGCagccgcagugCUGCGCgGCGaGCg -3'
miRNA:   3'- -CGCuUGGGCUa---CCG----------GAUGCGgCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.