miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28145 5' -65 NC_005887.1 + 32255 0.66 0.239
Target:  5'- uGGcCGCaCUGGCACUGGCucaucgcugagcgccGaCCUGCAGu -3'
miRNA:   3'- -CCaGCG-GGCCGUGGCCGu--------------C-GGGCGUC- -5'
28145 5' -65 NC_005887.1 + 40840 0.66 0.23255
Target:  5'- -cUCGaccgCCGGC-UCGGCGGCgCGCGGc -3'
miRNA:   3'- ccAGCg---GGCCGuGGCCGUCGgGCGUC- -5'
28145 5' -65 NC_005887.1 + 13621 0.66 0.226813
Target:  5'- ---aGCgCGGCGCgCGGCGG-CCGCAc -3'
miRNA:   3'- ccagCGgGCCGUG-GCCGUCgGGCGUc -5'
28145 5' -65 NC_005887.1 + 15699 0.66 0.226813
Target:  5'- cGG-CGCCCugaucGGCGagcCCGGCcGCCUGCu- -3'
miRNA:   3'- -CCaGCGGG-----CCGU---GGCCGuCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 2772 0.66 0.226813
Target:  5'- cGUCGCgCGGCucgGCCGcuuGCcGCCCGUAc -3'
miRNA:   3'- cCAGCGgGCCG---UGGC---CGuCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 11389 0.66 0.221197
Target:  5'- cGGcCGUCgCGGUugCGGC-GCUCGCu- -3'
miRNA:   3'- -CCaGCGG-GCCGugGCCGuCGGGCGuc -5'
28145 5' -65 NC_005887.1 + 32745 0.66 0.221197
Target:  5'- cGG-CGCUCGcgugcGCGCCGGCGcgcGCCaUGCAGc -3'
miRNA:   3'- -CCaGCGGGC-----CGUGGCCGU---CGG-GCGUC- -5'
28145 5' -65 NC_005887.1 + 26331 0.66 0.215699
Target:  5'- aGGcCGUggCCGGCGCUGGCcgGGUgCGCGa -3'
miRNA:   3'- -CCaGCG--GGCCGUGGCCG--UCGgGCGUc -5'
28145 5' -65 NC_005887.1 + 2420 0.66 0.215699
Target:  5'- cGUCgGCCUGcgaGCGCUGGUcGCCCGcCGGa -3'
miRNA:   3'- cCAG-CGGGC---CGUGGCCGuCGGGC-GUC- -5'
28145 5' -65 NC_005887.1 + 4692 0.66 0.210319
Target:  5'- -aUCGCgCCGGCggccACCGGCG--CCGCGGc -3'
miRNA:   3'- ccAGCG-GGCCG----UGGCCGUcgGGCGUC- -5'
28145 5' -65 NC_005887.1 + 3843 0.67 0.206623
Target:  5'- cGGgCGCUucuacguCGGCACCgacgauguguacggcGGCAGCCCgGCAu -3'
miRNA:   3'- -CCaGCGG-------GCCGUGG---------------CCGUCGGG-CGUc -5'
28145 5' -65 NC_005887.1 + 12084 0.67 0.205056
Target:  5'- cGUCGCUCGGUcaggucACCGacguGCuGGCCgCGCAGa -3'
miRNA:   3'- cCAGCGGGCCG------UGGC----CG-UCGG-GCGUC- -5'
28145 5' -65 NC_005887.1 + 19573 0.67 0.205056
Target:  5'- aGGUCGCCU-GCGCCGauGCucGCCgGCAu -3'
miRNA:   3'- -CCAGCGGGcCGUGGC--CGu-CGGgCGUc -5'
28145 5' -65 NC_005887.1 + 25096 0.67 0.199906
Target:  5'- gGGUucugCGCuaCCGGCugGCCGGCGGCCgccggCGCGa -3'
miRNA:   3'- -CCA----GCG--GGCCG--UGGCCGUCGG-----GCGUc -5'
28145 5' -65 NC_005887.1 + 39982 0.67 0.199906
Target:  5'- --gCGCCCGGCucgauCUGcGCGGCaCCGUAu -3'
miRNA:   3'- ccaGCGGGCCGu----GGC-CGUCG-GGCGUc -5'
28145 5' -65 NC_005887.1 + 26394 0.67 0.199906
Target:  5'- cGGaUCGUCUgcgGGUucuggucgaGCUGGCGGCCgCGCGGg -3'
miRNA:   3'- -CC-AGCGGG---CCG---------UGGCCGUCGG-GCGUC- -5'
28145 5' -65 NC_005887.1 + 34496 0.67 0.196871
Target:  5'- uGUCGCCCGG-ACCGuGguacugcacgcccauCAGgCCGCAGc -3'
miRNA:   3'- cCAGCGGGCCgUGGC-C---------------GUCgGGCGUC- -5'
28145 5' -65 NC_005887.1 + 16222 0.67 0.19487
Target:  5'- -aUCGCUCGcGCACuCGGCGcGCCgGUGGu -3'
miRNA:   3'- ccAGCGGGC-CGUG-GCCGU-CGGgCGUC- -5'
28145 5' -65 NC_005887.1 + 9178 0.67 0.193381
Target:  5'- --gCGCUugcgaccagaguaaCGGCGCCGGU-GCCCGCGc -3'
miRNA:   3'- ccaGCGG--------------GCCGUGGCCGuCGGGCGUc -5'
28145 5' -65 NC_005887.1 + 25116 0.67 0.189945
Target:  5'- cGGUUGUCCGGCcgagauccagcGCC-GCAGC-UGCAGg -3'
miRNA:   3'- -CCAGCGGGCCG-----------UGGcCGUCGgGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.