miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28147 5' -55.4 NC_005887.1 + 32617 0.66 0.645788
Target:  5'- gCGCGAgaACGCGGUGaaaGCCuggcacacGugGCCGg -3'
miRNA:   3'- -GCGUU--UGUGCCACgagCGG--------UugCGGU- -5'
28147 5' -55.4 NC_005887.1 + 23270 0.66 0.645788
Target:  5'- gCGCAgcucGugGCGGuUGCcgcaGCCcGCGCCGa -3'
miRNA:   3'- -GCGU----UugUGCC-ACGag--CGGuUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 5496 0.66 0.645788
Target:  5'- aGCGGGCGC-GUGgUCGCgccggucgcugCGGCGCCGc -3'
miRNA:   3'- gCGUUUGUGcCACgAGCG-----------GUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 9072 0.66 0.645788
Target:  5'- aGCGAcaACAacgugagGGUGCaUGCCAGCGCgGg -3'
miRNA:   3'- gCGUU--UGUg------CCACGaGCGGUUGCGgU- -5'
28147 5' -55.4 NC_005887.1 + 41553 0.66 0.634542
Target:  5'- gCGCGcACGCGaaGUcaGCCAGCGCCGa -3'
miRNA:   3'- -GCGUuUGUGCcaCGagCGGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 38294 0.66 0.634542
Target:  5'- aCGCAAcgguCAgGGUGCcgUCGCCGuUGUCGa -3'
miRNA:   3'- -GCGUUu---GUgCCACG--AGCGGUuGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 18540 0.66 0.634542
Target:  5'- gGCGuuCuCGGUGggCGgCGGCGCCGg -3'
miRNA:   3'- gCGUuuGuGCCACgaGCgGUUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 11383 0.66 0.634542
Target:  5'- uCGCGGuuGCGGcGCUCGCUgccgaGCCGg -3'
miRNA:   3'- -GCGUUugUGCCaCGAGCGGuug--CGGU- -5'
28147 5' -55.4 NC_005887.1 + 733 0.66 0.623295
Target:  5'- uCGUAccAGCAcCGGUGCUgcCGCCAuUGCUg -3'
miRNA:   3'- -GCGU--UUGU-GCCACGA--GCGGUuGCGGu -5'
28147 5' -55.4 NC_005887.1 + 30027 0.66 0.623295
Target:  5'- gCGCG---GCGGUGUUCGC-GGCGCUc -3'
miRNA:   3'- -GCGUuugUGCCACGAGCGgUUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 8164 0.66 0.623295
Target:  5'- gGCGAGCGCGGcgaGCUgCGCgcGCGCUu -3'
miRNA:   3'- gCGUUUGUGCCa--CGA-GCGguUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 34600 0.66 0.622171
Target:  5'- gCGUAGAUGCGGccuuccuUGCcCGCCAGCcauucGCCGu -3'
miRNA:   3'- -GCGUUUGUGCC-------ACGaGCGGUUG-----CGGU- -5'
28147 5' -55.4 NC_005887.1 + 8503 0.66 0.612055
Target:  5'- uCGCGuuGACGCGGaucGCUCGgCGAUaGCCu -3'
miRNA:   3'- -GCGU--UUGUGCCa--CGAGCgGUUG-CGGu -5'
28147 5' -55.4 NC_005887.1 + 4614 0.66 0.612055
Target:  5'- uGCAGuuccuCGuCGGUGCucaUCGCCucgaccggGACGCCGc -3'
miRNA:   3'- gCGUUu----GU-GCCACG---AGCGG--------UUGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 12194 0.66 0.612055
Target:  5'- gCGCGAcgGCGGccUGCUCGUCcuGGCGCUu -3'
miRNA:   3'- -GCGUUugUGCC--ACGAGCGG--UUGCGGu -5'
28147 5' -55.4 NC_005887.1 + 27958 0.66 0.612055
Target:  5'- aCGCu-GCugGGUaucGCUCuuGCCGcCGCCGg -3'
miRNA:   3'- -GCGuuUGugCCA---CGAG--CGGUuGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 5553 0.66 0.610932
Target:  5'- uGCugcGGC-CGGUGCUgCGCCAucggccuGCGUCGu -3'
miRNA:   3'- gCGu--UUGuGCCACGA-GCGGU-------UGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 31095 0.66 0.607564
Target:  5'- uGCAAGCcGCGGccUGCgaauaguggccugCGCCG-CGCCAc -3'
miRNA:   3'- gCGUUUG-UGCC--ACGa------------GCGGUuGCGGU- -5'
28147 5' -55.4 NC_005887.1 + 19259 0.66 0.600834
Target:  5'- uGUAccGCuuGGUGC-CGCCGACGCa- -3'
miRNA:   3'- gCGUu-UGugCCACGaGCGGUUGCGgu -5'
28147 5' -55.4 NC_005887.1 + 23359 0.66 0.589641
Target:  5'- aCGCAc-CGCGGcGCUCGCaGAUGCUu -3'
miRNA:   3'- -GCGUuuGUGCCaCGAGCGgUUGCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.