miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 36470 0.66 0.864097
Target:  5'- cGGUGCGcaaaugaacCAGACcAC-CAUCGCGGCc -3'
miRNA:   3'- -CUACGCuu-------GUUUGuUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 18361 0.66 0.864097
Target:  5'- --gGCGAcuuccGCGuaGACGGCGCGCCG-GcGCu -3'
miRNA:   3'- cuaCGCU-----UGU--UUGUUGCGUGGCgC-CG- -5'
28151 5' -51.3 NC_005887.1 + 10390 0.66 0.864097
Target:  5'- --gGCGGACGAuuGCGGCucgucauccuGCAgCGCGGg -3'
miRNA:   3'- cuaCGCUUGUU--UGUUG----------CGUgGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 31393 0.66 0.864097
Target:  5'- --gGCGuAGCGGu--GCGUGCCGUGGUu -3'
miRNA:   3'- cuaCGC-UUGUUuguUGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 28060 0.66 0.864097
Target:  5'- --cGCcGGCcGACGACGCgauucggcccgaGCCGgCGGCg -3'
miRNA:   3'- cuaCGcUUGuUUGUUGCG------------UGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 18225 0.66 0.863244
Target:  5'- cAUGcCGAGCAGcuucggcACGACGU-CgGCGGCc -3'
miRNA:   3'- cUAC-GCUUGUU-------UGUUGCGuGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 28917 0.66 0.861531
Target:  5'- gGAUGCGcGCGcccauugcgucgacGACAGCgaGCACUgGCGGUc -3'
miRNA:   3'- -CUACGCuUGU--------------UUGUUG--CGUGG-CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 16101 0.66 0.855453
Target:  5'- --gGUGGugAAACGcuuuccgguggcGCuGCGCCGCGcGCa -3'
miRNA:   3'- cuaCGCUugUUUGU------------UG-CGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 14712 0.66 0.855453
Target:  5'- --gGCG-ACGGGCA--GCACCGCgccGGCu -3'
miRNA:   3'- cuaCGCuUGUUUGUugCGUGGCG---CCG- -5'
28151 5' -51.3 NC_005887.1 + 32442 0.66 0.855453
Target:  5'- gGcgGCGAuCAGguugcGCAGCcaCugCGCGGCg -3'
miRNA:   3'- -CuaCGCUuGUU-----UGUUGc-GugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14977 0.66 0.855453
Target:  5'- cGAUcGCGAGUGAuuGCAGCgGCACCGUaGCa -3'
miRNA:   3'- -CUA-CGCUUGUU--UGUUG-CGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 3402 0.66 0.855453
Target:  5'- --cGCGAucuCGuuCAGCGCAUCGuuGCc -3'
miRNA:   3'- cuaCGCUu--GUuuGUUGCGUGGCgcCG- -5'
28151 5' -51.3 NC_005887.1 + 30901 0.66 0.854574
Target:  5'- cAUGCGcGGCAugcagAugGACGUcgaacuggccgagGCCGCGGUg -3'
miRNA:   3'- cUACGC-UUGU-----UugUUGCG-------------UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 2608 0.66 0.846552
Target:  5'- --gGCGGACAaaAACAuguacuCGCA-CGUGGCc -3'
miRNA:   3'- cuaCGCUUGU--UUGUu-----GCGUgGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 16248 0.66 0.846552
Target:  5'- --gGCGAGCGcACGG-GCACCGUcGCc -3'
miRNA:   3'- cuaCGCUUGUuUGUUgCGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 41410 0.66 0.846552
Target:  5'- cGAUGcCGAGCAGGucgaauucuucCAGCGCcUCGUGGg -3'
miRNA:   3'- -CUAC-GCUUGUUU-----------GUUGCGuGGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 14982 0.66 0.846552
Target:  5'- --cGcCGcGCAGGCcGCGCagGCCGCaGGCg -3'
miRNA:   3'- cuaC-GCuUGUUUGuUGCG--UGGCG-CCG- -5'
28151 5' -51.3 NC_005887.1 + 34699 0.66 0.846552
Target:  5'- --aGCGGGCGGcCGucguCGCGCUuGCGGUg -3'
miRNA:   3'- cuaCGCUUGUUuGUu---GCGUGG-CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 5405 0.66 0.846552
Target:  5'- --gGUGAACcGGCgGGCgGCGCCGCaGCg -3'
miRNA:   3'- cuaCGCUUGuUUG-UUG-CGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 36509 0.66 0.846552
Target:  5'- cGUGCGGuCGAccgcaGCAuCGgGCgGCGGCa -3'
miRNA:   3'- cUACGCUuGUU-----UGUuGCgUGgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.