miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 37693 0.67 0.818404
Target:  5'- --cGCauGCAAGCGACGC-CgGgGGCg -3'
miRNA:   3'- cuaCGcuUGUUUGUUGCGuGgCgCCG- -5'
28151 5' -51.3 NC_005887.1 + 37472 0.7 0.63235
Target:  5'- --gGCGuGCAGGCAGuCGCgACCGCGcaGCg -3'
miRNA:   3'- cuaCGCuUGUUUGUU-GCG-UGGCGC--CG- -5'
28151 5' -51.3 NC_005887.1 + 37432 0.67 0.808576
Target:  5'- aGGUGCGGAguGgagcGCGGCGCuuGCCugcGCGGUu -3'
miRNA:   3'- -CUACGCUUguU----UGUUGCG--UGG---CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 37095 0.67 0.798544
Target:  5'- --aGCGGGCGAGCAcagccucgGCGaucgCGCGGCc -3'
miRNA:   3'- cuaCGCUUGUUUGU--------UGCgug-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 36509 0.66 0.846552
Target:  5'- cGUGCGGuCGAccgcaGCAuCGgGCgGCGGCa -3'
miRNA:   3'- cUACGCUuGUU-----UGUuGCgUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 36470 0.66 0.864097
Target:  5'- cGGUGCGcaaaugaacCAGACcAC-CAUCGCGGCc -3'
miRNA:   3'- -CUACGCuu-------GUUUGuUGcGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 36324 0.69 0.70119
Target:  5'- --cGCGGACGAagGCAcggccGCGCACgaGCuGGCg -3'
miRNA:   3'- cuaCGCUUGUU--UGU-----UGCGUGg-CG-CCG- -5'
28151 5' -51.3 NC_005887.1 + 35867 0.67 0.798544
Target:  5'- -uUGCGcucGGCAGACAccGCGaCGCCGCGc- -3'
miRNA:   3'- cuACGC---UUGUUUGU--UGC-GUGGCGCcg -5'
28151 5' -51.3 NC_005887.1 + 35650 0.72 0.48272
Target:  5'- cGGUGCGAgcucgacgcugucgACAuacAGCAGCGCGCgaucgGCGGCc -3'
miRNA:   3'- -CUACGCU--------------UGU---UUGUUGCGUGg----CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 35417 0.7 0.597763
Target:  5'- uGGUGcCGGGCGugaagcuCGugGCcggccGCCGCGGCg -3'
miRNA:   3'- -CUAC-GCUUGUuu-----GUugCG-----UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 35316 0.71 0.574848
Target:  5'- -cUGCaucGCuccacuGCcGCGCGCCGCGGCg -3'
miRNA:   3'- cuACGcu-UGuu----UGuUGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 34699 0.66 0.846552
Target:  5'- --aGCGGGCGGcCGucguCGCGCUuGCGGUg -3'
miRNA:   3'- cuaCGCUUGUUuGUu---GCGUGG-CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 34307 0.67 0.788321
Target:  5'- -cUGCGGGCGgcaacggguAGCGAgaaaggguuuUGUGCCGUGGCg -3'
miRNA:   3'- cuACGCUUGU---------UUGUU----------GCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 34031 0.68 0.767351
Target:  5'- cGGUGCuGACGGACGcCGCACgCGaCGuGCu -3'
miRNA:   3'- -CUACGcUUGUUUGUuGCGUG-GC-GC-CG- -5'
28151 5' -51.3 NC_005887.1 + 33838 0.68 0.767351
Target:  5'- cGcgGCGAuCGAACGcAUGCAgggcguacgagcCUGCGGCa -3'
miRNA:   3'- -CuaCGCUuGUUUGU-UGCGU------------GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 33737 0.67 0.812532
Target:  5'- cGcgGCGAGgAu-CAGCGCGCCGgccuucacgagcaucUGGCg -3'
miRNA:   3'- -CuaCGCUUgUuuGUUGCGUGGC---------------GCCG- -5'
28151 5' -51.3 NC_005887.1 + 33370 0.72 0.52971
Target:  5'- --aGCGGAUguGC-ACGCGCCggcGCGGCa -3'
miRNA:   3'- cuaCGCUUGuuUGuUGCGUGG---CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 33352 0.73 0.475258
Target:  5'- --cGCGGAUGGAaguGCGCcgGCUGCGGCg -3'
miRNA:   3'- cuaCGCUUGUUUgu-UGCG--UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 33187 0.72 0.52971
Target:  5'- aGcgGcCGGACGAGCccguccagaugAACGCGCCGCacuGGCa -3'
miRNA:   3'- -CuaC-GCUUGUUUG-----------UUGCGUGGCG---CCG- -5'
28151 5' -51.3 NC_005887.1 + 33135 0.71 0.55214
Target:  5'- -uUGCGucgguagaAGCAGcCGAcCGUGCCGCGGCg -3'
miRNA:   3'- cuACGC--------UUGUUuGUU-GCGUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.