miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 16450 0.66 0.41317
Target:  5'- gCGGCCGUCU-CGacUGCAUUGACGcACu -3'
miRNA:   3'- -GCCGGCAGAcGCguGCGUGGCUGC-UG- -5'
28153 5' -60.4 NC_005887.1 + 39776 0.66 0.41317
Target:  5'- uGGUCG-CgGCGCuCGCGCCGAuCGuuGCg -3'
miRNA:   3'- gCCGGCaGaCGCGuGCGUGGCU-GC--UG- -5'
28153 5' -60.4 NC_005887.1 + 11878 0.66 0.41317
Target:  5'- aGGCCGcCgccugccuuaGCGUACGaACCGACGcCg -3'
miRNA:   3'- gCCGGCaGa---------CGCGUGCgUGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 1509 0.66 0.412254
Target:  5'- gCGGCCGU--GCGgaaCACGUACCcggaccugcugucGACGACc -3'
miRNA:   3'- -GCCGGCAgaCGC---GUGCGUGG-------------CUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 23334 0.66 0.407691
Target:  5'- gCGGCaaccgccacgagCUGCGCcuuuuGCGCGCCGACcGCc -3'
miRNA:   3'- -GCCGgca---------GACGCG-----UGCGUGGCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 15390 0.66 0.404062
Target:  5'- -cGCCGcgCUGauCGCGCGCGggcagcggaucgUCGACGACg -3'
miRNA:   3'- gcCGGCa-GAC--GCGUGCGU------------GGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 15261 0.66 0.404062
Target:  5'- -aGCCGcagugCUGCGCggcgaGCGUccGCCGGCGAa -3'
miRNA:   3'- gcCGGCa----GACGCG-----UGCG--UGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 28305 0.66 0.404062
Target:  5'- aGcGCCGcucgcgaagCUGCGCGCGCugcucaaaaccGCCGA-GACg -3'
miRNA:   3'- gC-CGGCa--------GACGCGUGCG-----------UGGCUgCUG- -5'
28153 5' -60.4 NC_005887.1 + 27310 0.66 0.403159
Target:  5'- gGGCCGgc-GCGCGaugcaguUGCGCCG-CGAUg -3'
miRNA:   3'- gCCGGCagaCGCGU-------GCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 21673 0.66 0.400455
Target:  5'- cCGGCUGa-UGCGUuaucguucgugguCGUGCCGACGAUg -3'
miRNA:   3'- -GCCGGCagACGCGu------------GCGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 21891 0.66 0.395082
Target:  5'- uGGCCGUUucauucgGCGCGCccggcaGCGCCG-CgGACg -3'
miRNA:   3'- gCCGGCAGa------CGCGUG------CGUGGCuG-CUG- -5'
28153 5' -60.4 NC_005887.1 + 36236 0.66 0.395082
Target:  5'- cCGGUCGgcacgGUG-ACGCGCCG-CGACg -3'
miRNA:   3'- -GCCGGCaga--CGCgUGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 13634 0.66 0.395082
Target:  5'- gCGGCCGcacUCaGCcgaGCA-GCACCGACGuGCa -3'
miRNA:   3'- -GCCGGC---AGaCG---CGUgCGUGGCUGC-UG- -5'
28153 5' -60.4 NC_005887.1 + 19573 0.66 0.386232
Target:  5'- aGGUCGcCUGCGCcgAUGCucGCCGGCa-- -3'
miRNA:   3'- gCCGGCaGACGCG--UGCG--UGGCUGcug -5'
28153 5' -60.4 NC_005887.1 + 15914 0.66 0.386232
Target:  5'- uGGCCGacCUGCGUuccGCGCggGCCGGaauCGAUg -3'
miRNA:   3'- gCCGGCa-GACGCG---UGCG--UGGCU---GCUG- -5'
28153 5' -60.4 NC_005887.1 + 32422 0.66 0.386232
Target:  5'- uGGCCGgcgGCG-AUGUgGCCGGCGGCg -3'
miRNA:   3'- gCCGGCagaCGCgUGCG-UGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 34275 0.66 0.386232
Target:  5'- gCGGCU---UGCGCAUGCcgucGCCGuGCGGCu -3'
miRNA:   3'- -GCCGGcagACGCGUGCG----UGGC-UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 5411 0.66 0.386232
Target:  5'- cCGGCgGgcgGCGC-CGCAgCGAcCGGCg -3'
miRNA:   3'- -GCCGgCagaCGCGuGCGUgGCU-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 16516 0.66 0.386232
Target:  5'- aGGCCGaUC-GCGuCGC-CGCCGGCGcCg -3'
miRNA:   3'- gCCGGC-AGaCGC-GUGcGUGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 37064 0.66 0.386232
Target:  5'- cCGGCCuUCUcgcugacgGCGUuCGCACCGAagcgGGCg -3'
miRNA:   3'- -GCCGGcAGA--------CGCGuGCGUGGCUg---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.