miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28157 5' -60.5 NC_005887.1 + 13672 0.66 0.43145
Target:  5'- -gCGAUCaGCGGCGCGa--CGgGUGGGa -3'
miRNA:   3'- caGCUAG-CGCUGCGCcacGCgCGCCC- -5'
28157 5' -60.5 NC_005887.1 + 4696 0.66 0.422198
Target:  5'- cUUGAUCGCGcCgGCGGccaccgGCGCcGCGGc -3'
miRNA:   3'- cAGCUAGCGCuG-CGCCa-----CGCG-CGCCc -5'
28157 5' -60.5 NC_005887.1 + 4568 0.66 0.413066
Target:  5'- aGUCGG-CGagcaGACGCGcGaUGCGCGCGc- -3'
miRNA:   3'- -CAGCUaGCg---CUGCGC-C-ACGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 39461 0.66 0.413066
Target:  5'- -gCGGUCGCGACcaCGGuUGCGcCGCcGGc -3'
miRNA:   3'- caGCUAGCGCUGc-GCC-ACGC-GCGcCC- -5'
28157 5' -60.5 NC_005887.1 + 16065 0.66 0.413066
Target:  5'- -cCGGcUCGCGGCG-GGUcuGCGCGCGc- -3'
miRNA:   3'- caGCU-AGCGCUGCgCCA--CGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 23986 0.66 0.413066
Target:  5'- cUCGAgCGCGAgGCG--GCGCuCGGGa -3'
miRNA:   3'- cAGCUaGCGCUgCGCcaCGCGcGCCC- -5'
28157 5' -60.5 NC_005887.1 + 835 0.66 0.404058
Target:  5'- -gCGAUCGCGGcCGCgaagaaagccaaGGUGCcCGUGGa -3'
miRNA:   3'- caGCUAGCGCU-GCG------------CCACGcGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 10993 0.66 0.404058
Target:  5'- cGUCGAggaUGGCGUGGUGCucggGUGCGGcGg -3'
miRNA:   3'- -CAGCUagcGCUGCGCCACG----CGCGCC-C- -5'
28157 5' -60.5 NC_005887.1 + 40803 0.66 0.404058
Target:  5'- -gCGAUCGCcucGACGCGG-GCG-GCGa- -3'
miRNA:   3'- caGCUAGCG---CUGCGCCaCGCgCGCcc -5'
28157 5' -60.5 NC_005887.1 + 42181 0.66 0.403164
Target:  5'- -gCGAauUCGCGcGCGCuGGcucgucgcauugcUGCGCGCGGu -3'
miRNA:   3'- caGCU--AGCGC-UGCG-CC-------------ACGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 13905 0.66 0.395174
Target:  5'- cGUCGGcauUCGUGgcacguACGCGGUGU-CGaCGGGg -3'
miRNA:   3'- -CAGCU---AGCGC------UGCGCCACGcGC-GCCC- -5'
28157 5' -60.5 NC_005887.1 + 28643 0.66 0.386418
Target:  5'- cGUCGAcCGCGucCGCGcaGCGgGCGGc -3'
miRNA:   3'- -CAGCUaGCGCu-GCGCcaCGCgCGCCc -5'
28157 5' -60.5 NC_005887.1 + 8536 0.67 0.37779
Target:  5'- uGUCG-UCGcCGA-GCGGuUGCGC-CGGGc -3'
miRNA:   3'- -CAGCuAGC-GCUgCGCC-ACGCGcGCCC- -5'
28157 5' -60.5 NC_005887.1 + 40357 0.67 0.369293
Target:  5'- cGUCGAgCGCGGcCGUGccgcucGUcGCGCGCGaGGa -3'
miRNA:   3'- -CAGCUaGCGCU-GCGC------CA-CGCGCGC-CC- -5'
28157 5' -60.5 NC_005887.1 + 30757 0.67 0.369293
Target:  5'- cGUCGGUCagcuCGAC-C-GUGCGCGCGGc -3'
miRNA:   3'- -CAGCUAGc---GCUGcGcCACGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 10704 0.67 0.368451
Target:  5'- cGUCGAaCGCGauggaccGCGCGGUGC-CGCu-- -3'
miRNA:   3'- -CAGCUaGCGC-------UGCGCCACGcGCGccc -5'
28157 5' -60.5 NC_005887.1 + 21402 0.67 0.368451
Target:  5'- aGUCGuguUCGUaccggccGAUGCGGUcgGCGCgGUGGGc -3'
miRNA:   3'- -CAGCu--AGCG-------CUGCGCCA--CGCG-CGCCC- -5'
28157 5' -60.5 NC_005887.1 + 37409 0.67 0.360928
Target:  5'- -gCGGUCGCGACuGCcugcacgccaGGUGCggaguggaGCGCGGc -3'
miRNA:   3'- caGCUAGCGCUG-CG----------CCACG--------CGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 1499 0.67 0.352696
Target:  5'- cUCG--CGCGGCGCGGc-CGUGCGGa -3'
miRNA:   3'- cAGCuaGCGCUGCGCCacGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 30476 0.67 0.344597
Target:  5'- -gCGGUgCGCGACGCGGccCGUGCGu- -3'
miRNA:   3'- caGCUA-GCGCUGCGCCacGCGCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.