miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28158 5' -55.2 NC_005887.1 + 27422 0.66 0.658932
Target:  5'- uGCCGAcGCucGUCUGCgcgcCGCUgcgcgUGGCGc -3'
miRNA:   3'- gCGGCU-CG--UAGACGau--GUGAa----GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 34292 0.66 0.658932
Target:  5'- uCGCCGuGCggCUGaCUGCGgg-CGGCa -3'
miRNA:   3'- -GCGGCuCGuaGAC-GAUGUgaaGCCGc -5'
28158 5' -55.2 NC_005887.1 + 30367 0.66 0.658932
Target:  5'- uGCCGAGC-UCgGUguacCGC-UCGGCGu -3'
miRNA:   3'- gCGGCUCGuAGaCGau--GUGaAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 1548 0.66 0.647711
Target:  5'- cCGCgCGAGCG-CcGC-ACGCcgUCGGCGu -3'
miRNA:   3'- -GCG-GCUCGUaGaCGaUGUGa-AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28270 0.66 0.647711
Target:  5'- cCGCCGAGacgC-GCgGCGCUgaugCGGCGc -3'
miRNA:   3'- -GCGGCUCguaGaCGaUGUGAa---GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 18997 0.66 0.636475
Target:  5'- cCGCCGAcgGCcgCUGCgaga-UUCGGUGa -3'
miRNA:   3'- -GCGGCU--CGuaGACGaugugAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 26109 0.66 0.636475
Target:  5'- gCGUCGAGCAggaugucCUGCacggcGCGCUUCGuuucGCGg -3'
miRNA:   3'- -GCGGCUCGUa------GACGa----UGUGAAGC----CGC- -5'
28158 5' -55.2 NC_005887.1 + 40609 0.66 0.614001
Target:  5'- uCGaCGAGCGUgUGUggccGCACaUCGGCa -3'
miRNA:   3'- -GCgGCUCGUAgACGa---UGUGaAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 2432 0.66 0.614001
Target:  5'- gCGCCGAcgaauGaCAcCUcGCUGCGCUaCGGCGc -3'
miRNA:   3'- -GCGGCU-----C-GUaGA-CGAUGUGAaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41999 0.66 0.614001
Target:  5'- aCGCCGGGCAgcucagCUGCgagccgcucaGCACgugCGGgGu -3'
miRNA:   3'- -GCGGCUCGUa-----GACGa---------UGUGaa-GCCgC- -5'
28158 5' -55.2 NC_005887.1 + 31904 0.66 0.614001
Target:  5'- aGCCGgucaGGCAUgCUGCUGCAagaUCcgGGCGu -3'
miRNA:   3'- gCGGC----UCGUA-GACGAUGUga-AG--CCGC- -5'
28158 5' -55.2 NC_005887.1 + 21575 0.67 0.591593
Target:  5'- aGCCG-GCGUC-GUUGCGCcgauugcCGGCGg -3'
miRNA:   3'- gCGGCuCGUAGaCGAUGUGaa-----GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28472 0.67 0.590476
Target:  5'- uGCCGGGCcgCUucaGCUcgacgaaguagacGCGCgcCGGCGg -3'
miRNA:   3'- gCGGCUCGuaGA---CGA-------------UGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41413 0.67 0.584895
Target:  5'- uGCCGAGCAggucgaauUCUuccagcgccucguggGCUauGCGCUgcUCGGCa -3'
miRNA:   3'- gCGGCUCGU--------AGA---------------CGA--UGUGA--AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 21403 0.67 0.584895
Target:  5'- cCGCCG-GCAUucgguaacaccacacCUGCcGCugUuUCGGCGa -3'
miRNA:   3'- -GCGGCuCGUA---------------GACGaUGugA-AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 5722 0.67 0.580438
Target:  5'- uCGCCGGuGCcgCaUGCUuCGCUUCGaGCu -3'
miRNA:   3'- -GCGGCU-CGuaG-ACGAuGUGAAGC-CGc -5'
28158 5' -55.2 NC_005887.1 + 32833 0.67 0.569327
Target:  5'- gCGCaCGAGCcggCUGCaugGCGCgcgcCGGCGc -3'
miRNA:   3'- -GCG-GCUCGua-GACGa--UGUGaa--GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15077 0.67 0.547274
Target:  5'- aGCgCGAGCAUCaGCUcgggcgGCACgccugCGGCc -3'
miRNA:   3'- gCG-GCUCGUAGaCGA------UGUGaa---GCCGc -5'
28158 5' -55.2 NC_005887.1 + 40451 0.68 0.536348
Target:  5'- uGCCGGGCAUCacgauuuccucGC-GCGCgaCGGCGg -3'
miRNA:   3'- gCGGCUCGUAGa----------CGaUGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28335 0.68 0.536348
Target:  5'- uGUCG-GCGUCUGCgccgGCGCggcaUUGGCu -3'
miRNA:   3'- gCGGCuCGUAGACGa---UGUGa---AGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.