miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 3' -57.3 NC_005887.1 + 15352 0.66 0.528998
Target:  5'- --aUGCGGCAgUCUCGUuCGCCGGCg- -3'
miRNA:   3'- uggACGUUGU-GGAGCGuGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 7422 0.66 0.528998
Target:  5'- cACCcGCcgcCGCCUCGUuugGCGCUGGCg- -3'
miRNA:   3'- -UGGaCGuu-GUGGAGCG---UGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 2427 0.66 0.528998
Target:  5'- aGCCcGCGccgacgaaugACACCUCGCugcgcuacgGCGCCGucgacgaggcGCUGa -3'
miRNA:   3'- -UGGaCGU----------UGUGGAGCG---------UGCGGC----------UGAC- -5'
28162 3' -57.3 NC_005887.1 + 26525 0.66 0.518304
Target:  5'- cGCCUGCAguuucaggucguGCACCUCGUGCcacggugcgguGUCG-CUGc -3'
miRNA:   3'- -UGGACGU------------UGUGGAGCGUG-----------CGGCuGAC- -5'
28162 3' -57.3 NC_005887.1 + 35020 0.66 0.518304
Target:  5'- aACCUGCGcACGCC-CGCcgaguucgaaGCCGGCg- -3'
miRNA:   3'- -UGGACGU-UGUGGaGCGug--------CGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 35380 0.66 0.507697
Target:  5'- gGCCUGCAGCAgCUCauGCucgauGCGCCcGCg- -3'
miRNA:   3'- -UGGACGUUGUgGAG--CG-----UGCGGcUGac -5'
28162 3' -57.3 NC_005887.1 + 29373 0.66 0.507697
Target:  5'- cGCgaGCGGCAugcCCUCGgccCAUGCCGGCg- -3'
miRNA:   3'- -UGgaCGUUGU---GGAGC---GUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 21602 0.66 0.507697
Target:  5'- cGCCUGCAGCGucgugaauuucCCggcagccggCGUcguuGCGCCGAUUGc -3'
miRNA:   3'- -UGGACGUUGU-----------GGa--------GCG----UGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 25093 0.66 0.507697
Target:  5'- uUCUGCGcUACCg-GCugGCCGGCg- -3'
miRNA:   3'- uGGACGUuGUGGagCGugCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 13116 0.66 0.497182
Target:  5'- gGCCUuguacGCGGCGa--CGCugGCCGugUGg -3'
miRNA:   3'- -UGGA-----CGUUGUggaGCGugCGGCugAC- -5'
28162 3' -57.3 NC_005887.1 + 39471 0.66 0.497182
Target:  5'- uGCCUGaaaAGCGCgUguugcCGCugGCCaGGCUGa -3'
miRNA:   3'- -UGGACg--UUGUGgA-----GCGugCGG-CUGAC- -5'
28162 3' -57.3 NC_005887.1 + 41604 0.66 0.490921
Target:  5'- cGCgUGCGcgccgaGCGCCUCGCGgaucuugccgagcacCGUCGACUu -3'
miRNA:   3'- -UGgACGU------UGUGGAGCGU---------------GCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 8567 0.66 0.486767
Target:  5'- uGCCgaagGCAGCACCgcagcagguuUCGUucgACGCUGGCg- -3'
miRNA:   3'- -UGGa---CGUUGUGG----------AGCG---UGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 26843 0.66 0.486767
Target:  5'- -aCUGCAcgAUCUCGCucgacccgGCCGACUGg -3'
miRNA:   3'- ugGACGUugUGGAGCGug------CGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 2946 0.67 0.476456
Target:  5'- cGCC-GCGGCACCgcCGCGaccauccuCGCCGGCg- -3'
miRNA:   3'- -UGGaCGUUGUGGa-GCGU--------GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 5472 0.67 0.475431
Target:  5'- -gCUGCGGCGCCgccCGCcgguucaccggucGCGCUGGCUu -3'
miRNA:   3'- ugGACGUUGUGGa--GCG-------------UGCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 15793 0.67 0.472362
Target:  5'- uCCUGCAGCuggcgcgucagcuCCUU-CACGCCGGCg- -3'
miRNA:   3'- uGGACGUUGu------------GGAGcGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 4622 0.67 0.466255
Target:  5'- cGCC-GCGGCGCCggugGC-CGCCGGCg- -3'
miRNA:   3'- -UGGaCGUUGUGGag--CGuGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 25196 0.67 0.466255
Target:  5'- gACCUGCAGCugCggCGCugGaucuCGGCc- -3'
miRNA:   3'- -UGGACGUUGugGa-GCGugCg---GCUGac -5'
28162 3' -57.3 NC_005887.1 + 36057 0.67 0.456168
Target:  5'- gGCCU-CGACGCgCUCGCgcACGCCGuCg- -3'
miRNA:   3'- -UGGAcGUUGUG-GAGCG--UGCGGCuGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.