miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28167 5' -62.7 NC_005887.1 + 1588 0.66 0.30326
Target:  5'- gGUGGGUGGgUGgCGGCCucGAacCGCCAa -3'
miRNA:   3'- -CAUCCGCCgGCaGCCGGcuCU--GCGGU- -5'
28167 5' -62.7 NC_005887.1 + 2889 0.66 0.30326
Target:  5'- -cAGGCgacgacGGacaCGUCGGCCGccgcgaacGACGCCGc -3'
miRNA:   3'- caUCCG------CCg--GCAGCCGGCu-------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 17761 0.66 0.30326
Target:  5'- uGUAGcCGGCCGucacgaacaUCGuGCCGAcGuCGCCAa -3'
miRNA:   3'- -CAUCcGCCGGC---------AGC-CGGCU-CuGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 35691 0.66 0.296016
Target:  5'- --cGGCGGCCGgcuucgCGGuuuCCGAGAU-CCAc -3'
miRNA:   3'- cauCCGCCGGCa-----GCC---GGCUCUGcGGU- -5'
28167 5' -62.7 NC_005887.1 + 15620 0.66 0.288907
Target:  5'- -gAGcGCGGUCGcgCGcGCCGAGuCGUCGc -3'
miRNA:   3'- caUC-CGCCGGCa-GC-CGGCUCuGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 10095 0.66 0.281933
Target:  5'- uGUGGGCGGCC--CGcGCCGAcg-GCCAg -3'
miRNA:   3'- -CAUCCGCCGGcaGC-CGGCUcugCGGU- -5'
28167 5' -62.7 NC_005887.1 + 26207 0.66 0.281933
Target:  5'- -gGGGCGGCgGU-GGCCGGccugcagcuGGCGCaCGg -3'
miRNA:   3'- caUCCGCCGgCAgCCGGCU---------CUGCG-GU- -5'
28167 5' -62.7 NC_005887.1 + 5814 0.66 0.281933
Target:  5'- --cGGCGGCgaucgaGUCGGCgCGGGuCGCgAa -3'
miRNA:   3'- cauCCGCCGg-----CAGCCG-GCUCuGCGgU- -5'
28167 5' -62.7 NC_005887.1 + 41650 0.66 0.281933
Target:  5'- cUGGGCcGCCGcUGGCCGAcaggaacgucucGGCGCUg -3'
miRNA:   3'- cAUCCGcCGGCaGCCGGCU------------CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 26330 0.66 0.275093
Target:  5'- -cAGGCcguGGCCGgcgcUGGCCGGGuGCGCgAa -3'
miRNA:   3'- caUCCG---CCGGCa---GCCGGCUC-UGCGgU- -5'
28167 5' -62.7 NC_005887.1 + 1864 0.66 0.275093
Target:  5'- --cGGCGGCaCGUccuucggguagCGGCCGAcGCGCa- -3'
miRNA:   3'- cauCCGCCG-GCA-----------GCCGGCUcUGCGgu -5'
28167 5' -62.7 NC_005887.1 + 40752 0.66 0.275093
Target:  5'- -gAGGCGaucGCCGUUGGCgCGccgcGCGCCGc -3'
miRNA:   3'- caUCCGC---CGGCAGCCG-GCuc--UGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 24473 0.66 0.268386
Target:  5'- uUGGcGCGGCCGaUCGuGUCGucGAUGCCc -3'
miRNA:   3'- cAUC-CGCCGGC-AGC-CGGCu-CUGCGGu -5'
28167 5' -62.7 NC_005887.1 + 28830 0.66 0.268386
Target:  5'- -cGGcGCGGUac-UGGcCCGGGACGCCAg -3'
miRNA:   3'- caUC-CGCCGgcaGCC-GGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 15755 0.66 0.268386
Target:  5'- -aGGGCaugaaguacaaGGCCG-CGGCCGcgaAGGCGCa- -3'
miRNA:   3'- caUCCG-----------CCGGCaGCCGGC---UCUGCGgu -5'
28167 5' -62.7 NC_005887.1 + 37122 0.66 0.268386
Target:  5'- ---cGCGGCCGUCGcCCGGaaucuucugguuGAUGCCGa -3'
miRNA:   3'- caucCGCCGGCAGCcGGCU------------CUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 17247 0.67 0.25537
Target:  5'- cGUAcGGCGGCgucaauaagauCGUgcCGGgCGAGACGUCGg -3'
miRNA:   3'- -CAU-CCGCCG-----------GCA--GCCgGCUCUGCGGU- -5'
28167 5' -62.7 NC_005887.1 + 4304 0.67 0.242876
Target:  5'- --cGuGCGGCCGagcgUCGGCgCGAGcagcACGCCu -3'
miRNA:   3'- cauC-CGCCGGC----AGCCG-GCUC----UGCGGu -5'
28167 5' -62.7 NC_005887.1 + 24026 0.67 0.242876
Target:  5'- aGUGGGCcgaGGUCGUCGGUgcgugCGcAGACgGCCGc -3'
miRNA:   3'- -CAUCCG---CCGGCAGCCG-----GC-UCUG-CGGU- -5'
28167 5' -62.7 NC_005887.1 + 4633 0.67 0.241047
Target:  5'- --cGGUGGCCGcCGGCgCGAucaaggaucucagcGACGCgCAg -3'
miRNA:   3'- cauCCGCCGGCaGCCG-GCU--------------CUGCG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.