miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 5' -56.8 NC_005887.1 + 5615 0.66 0.56088
Target:  5'- aUAGAuuGCAGCCAcGUgGGCGcagaaUCGUGCg -3'
miRNA:   3'- cGUCU--CGUCGGU-CAgUCGU-----AGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 30908 0.66 0.56088
Target:  5'- --cGGGUAGuuCCAGcgCGGCAUCGCcuuguGCCa -3'
miRNA:   3'- cguCUCGUC--GGUCa-GUCGUAGCG-----CGG- -5'
28170 5' -56.8 NC_005887.1 + 9237 0.66 0.56088
Target:  5'- aGCGaacuGC-GCCGcGUCGGCgAUCGCGUCu -3'
miRNA:   3'- -CGUcu--CGuCGGU-CAGUCG-UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 12064 0.66 0.56088
Target:  5'- cGCGcuGCAGCaGGUCGGCA-CGuCGCUc -3'
miRNA:   3'- -CGUcuCGUCGgUCAGUCGUaGC-GCGG- -5'
28170 5' -56.8 NC_005887.1 + 15875 0.66 0.56088
Target:  5'- aGCAGGcGCA-CCAG-CAGCucggUGCGCUc -3'
miRNA:   3'- -CGUCU-CGUcGGUCaGUCGua--GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 17815 0.66 0.56088
Target:  5'- --cGGGC-GCCA-UCAGCcgCGCgGCCg -3'
miRNA:   3'- cguCUCGuCGGUcAGUCGuaGCG-CGG- -5'
28170 5' -56.8 NC_005887.1 + 41369 0.66 0.549924
Target:  5'- uGCGGuGUuccuuGCCcGgcggCAGCAgCGCGCCc -3'
miRNA:   3'- -CGUCuCGu----CGGuCa---GUCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 19204 0.66 0.549923
Target:  5'- aCAG-GCGGCgCGGUUacgacgAGCGUCGUGUa -3'
miRNA:   3'- cGUCuCGUCG-GUCAG------UCGUAGCGCGg -5'
28170 5' -56.8 NC_005887.1 + 1348 0.66 0.549923
Target:  5'- cGCAGGGCGagacgcucgagcGCUAcauccuGUCccgcGCGUCGCGCUc -3'
miRNA:   3'- -CGUCUCGU------------CGGU------CAGu---CGUAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 17144 0.66 0.549923
Target:  5'- cGCA-AGguGCUGGUCGGCGaagaUCGCGa- -3'
miRNA:   3'- -CGUcUCguCGGUCAGUCGU----AGCGCgg -5'
28170 5' -56.8 NC_005887.1 + 12699 0.66 0.543381
Target:  5'- uGCAGGgucacgcgcGCAcGCUGGUCgcgcAGCAgcagaaugcgcucgaUCGCGCCg -3'
miRNA:   3'- -CGUCU---------CGU-CGGUCAG----UCGU---------------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 27356 0.66 0.539034
Target:  5'- -gGGAGCA-CCuGUcCGGCAuggaagUCGUGCCg -3'
miRNA:   3'- cgUCUCGUcGGuCA-GUCGU------AGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 36248 0.66 0.539034
Target:  5'- gGCAcGGUgaucCCGGUCGGCAcggugaCGCGCCg -3'
miRNA:   3'- -CGUcUCGuc--GGUCAGUCGUa-----GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 40781 0.66 0.539034
Target:  5'- cGCcGAGCcGgCGGUCgagguucguggcGGCGaCGCGCCg -3'
miRNA:   3'- -CGuCUCGuCgGUCAG------------UCGUaGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 13109 0.66 0.517485
Target:  5'- uGCAGGGCGuGCCgaaGGUCGaCAccucgagCGUGCCg -3'
miRNA:   3'- -CGUCUCGU-CGG---UCAGUcGUa------GCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 15254 0.66 0.517485
Target:  5'- aGCAG-GCAGCCgcAGUgCugcgcggcgAGCGUC-CGCCg -3'
miRNA:   3'- -CGUCuCGUCGG--UCA-G---------UCGUAGcGCGG- -5'
28170 5' -56.8 NC_005887.1 + 21873 0.66 0.517485
Target:  5'- cGCAcAGCAGCUcaUCAGCAcguggccCGCGCg -3'
miRNA:   3'- -CGUcUCGUCGGucAGUCGUa------GCGCGg -5'
28170 5' -56.8 NC_005887.1 + 39915 0.66 0.514283
Target:  5'- cGguGAGCGGUCgauugaugugcgacGG-CGGCccGUCGCGCUu -3'
miRNA:   3'- -CguCUCGUCGG--------------UCaGUCG--UAGCGCGG- -5'
28170 5' -56.8 NC_005887.1 + 10632 0.66 0.50684
Target:  5'- cGCGGAGC--CUGGgCGGCGUCGUuggGCCa -3'
miRNA:   3'- -CGUCUCGucGGUCaGUCGUAGCG---CGG- -5'
28170 5' -56.8 NC_005887.1 + 15974 0.66 0.50684
Target:  5'- cGCGGAacGCAgGUCGGcCAGCugCGCGUCg -3'
miRNA:   3'- -CGUCU--CGU-CGGUCaGUCGuaGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.