miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28177 5' -51.8 NC_005887.1 + 35550 0.66 0.798263
Target:  5'- cCAGuCGCGCAGCGUGAGGCCgAUGuCc- -3'
miRNA:   3'- -GUU-GCGCGUCGUGUUUCGG-UACuGau -5'
28177 5' -51.8 NC_005887.1 + 37213 0.66 0.798263
Target:  5'- cCGACGUcggGCAGCGCGGucauGCCGagcuUGGCg- -3'
miRNA:   3'- -GUUGCG---CGUCGUGUUu---CGGU----ACUGau -5'
28177 5' -51.8 NC_005887.1 + 5721 0.66 0.798263
Target:  5'- aCGACGCGCAGgAgAAGGCgCGcGAUg- -3'
miRNA:   3'- -GUUGCGCGUCgUgUUUCG-GUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 5489 0.66 0.798263
Target:  5'- gAugGCGCAGCACc-GGCCGcaGCa- -3'
miRNA:   3'- gUugCGCGUCGUGuuUCGGUacUGau -5'
28177 5' -51.8 NC_005887.1 + 9565 0.66 0.798263
Target:  5'- gCGGCGCGCGccgauccuGCGCAcGAGCCGgcugcaUGGCg- -3'
miRNA:   3'- -GUUGCGCGU--------CGUGU-UUCGGU------ACUGau -5'
28177 5' -51.8 NC_005887.1 + 25664 0.66 0.787842
Target:  5'- cCAGC-CGCAGCGCGucGCCAUcGuCg- -3'
miRNA:   3'- -GUUGcGCGUCGUGUuuCGGUA-CuGau -5'
28177 5' -51.8 NC_005887.1 + 17481 0.66 0.787842
Target:  5'- aGACGCagauGCAGCugAcGGCCGUG-Ca- -3'
miRNA:   3'- gUUGCG----CGUCGugUuUCGGUACuGau -5'
28177 5' -51.8 NC_005887.1 + 13965 0.66 0.787842
Target:  5'- gGGCGCGCGGuCACGGuGCaCcUGACg- -3'
miRNA:   3'- gUUGCGCGUC-GUGUUuCG-GuACUGau -5'
28177 5' -51.8 NC_005887.1 + 6878 0.66 0.787842
Target:  5'- cCAACGCGCAgGCGCugaucAAGUaCAUGAUc- -3'
miRNA:   3'- -GUUGCGCGU-CGUGu----UUCG-GUACUGau -5'
28177 5' -51.8 NC_005887.1 + 36037 0.66 0.777236
Target:  5'- uCGGCGCcgGCgaGGCGCAAGGCCucGACg- -3'
miRNA:   3'- -GUUGCG--CG--UCGUGUUUCGGuaCUGau -5'
28177 5' -51.8 NC_005887.1 + 39198 0.66 0.777236
Target:  5'- uCGAgGCGCGGCAuCAGguAGUCgAUGACg- -3'
miRNA:   3'- -GUUgCGCGUCGU-GUU--UCGG-UACUGau -5'
28177 5' -51.8 NC_005887.1 + 154 0.66 0.755524
Target:  5'- -cGCGCGCAGCaauGCGacGAGCCAgcGCg- -3'
miRNA:   3'- guUGCGCGUCG---UGU--UUCGGUacUGau -5'
28177 5' -51.8 NC_005887.1 + 11097 0.66 0.744445
Target:  5'- gCGugGCGCAucggcuggugcGCGCGAAgcuggccgaggcGCCGUGGCg- -3'
miRNA:   3'- -GUugCGCGU-----------CGUGUUU------------CGGUACUGau -5'
28177 5' -51.8 NC_005887.1 + 12102 0.66 0.744445
Target:  5'- cCGACGUGCuggccGCGCAGAagcGCCAgGACg- -3'
miRNA:   3'- -GUUGCGCGu----CGUGUUU---CGGUaCUGau -5'
28177 5' -51.8 NC_005887.1 + 644 0.66 0.744445
Target:  5'- aAGCGCGCGGCGagcgcacGCgCAUGACc- -3'
miRNA:   3'- gUUGCGCGUCGUguuu---CG-GUACUGau -5'
28177 5' -51.8 NC_005887.1 + 4959 0.66 0.741095
Target:  5'- gCGAcCGCGCAGCGCcagcugaaggagaaGGAGCCGacGCUGc -3'
miRNA:   3'- -GUU-GCGCGUCGUG--------------UUUCGGUacUGAU- -5'
28177 5' -51.8 NC_005887.1 + 41448 0.67 0.733236
Target:  5'- gCGACGCGgaucgaAGC-CGAGGCCGccUGACUc -3'
miRNA:   3'- -GUUGCGCg-----UCGuGUUUCGGU--ACUGAu -5'
28177 5' -51.8 NC_005887.1 + 7851 0.67 0.733236
Target:  5'- gGGCGUGCAGUACcacGGUCcgGGCg- -3'
miRNA:   3'- gUUGCGCGUCGUGuu-UCGGuaCUGau -5'
28177 5' -51.8 NC_005887.1 + 38219 0.67 0.733236
Target:  5'- -cGCGCGCAGCcuugcGCGuGGCCggGAUg- -3'
miRNA:   3'- guUGCGCGUCG-----UGUuUCGGuaCUGau -5'
28177 5' -51.8 NC_005887.1 + 23256 0.67 0.721912
Target:  5'- uCGGCGCGCaaaaGGCGCA--GCuCGUGGCg- -3'
miRNA:   3'- -GUUGCGCG----UCGUGUuuCG-GUACUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.