miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 67748 0.66 0.999997
Target:  5'- aGUAUAUAGCUUAaGUgUUAAAaGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 50083 0.66 0.999996
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAc---- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUuccca -5'
28250 5' -45.3 NC_005902.1 + 43830 0.66 0.999996
Target:  5'- --cGUGCaAGcCUUAGGaUUUAAAGGGUu -3'
miRNA:   3'- acaUAUG-UC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 27921 0.66 0.999996
Target:  5'- uUGUAUAUAGCUUAaGUaUUAAAGGu- -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 88325 0.66 0.999996
Target:  5'- -aUAUAUAGCUUAGa---UAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCcagaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 7677 0.66 0.999994
Target:  5'- uUGUAUAUAGCUUAGGUagagUAAAa--- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAga--AUUUccca -5'
28250 5' -45.3 NC_005902.1 + 5089 0.66 0.999994
Target:  5'- ----aACAGCaUGGGU--UAAAGGGUa -3'
miRNA:   3'- acauaUGUCGaAUCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 65669 0.66 0.999992
Target:  5'- aGUAUA-AGcCUUAGGaUUUAAAGGGg -3'
miRNA:   3'- aCAUAUgUC-GAAUCCaGAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 73971 0.66 0.999992
Target:  5'- -aUAUAUgaUUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGucGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 68110 0.66 0.999992
Target:  5'- --cAUAUAaCUUAGGUggUAGAGGGUa -3'
miRNA:   3'- acaUAUGUcGAAUCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 149241 0.66 0.999992
Target:  5'- cUGUGUAUAGCUUAaGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 116672 0.66 0.999992
Target:  5'- --cAUAUAGUUUAGGUgUUAAAcGGUa -3'
miRNA:   3'- acaUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 67392 0.67 0.999989
Target:  5'- gUGUAUAUAGCUUAaGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 90096 0.67 0.999984
Target:  5'- aGUAUAUAaCUUAaGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUcGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 48419 0.67 0.999984
Target:  5'- uUGUAUAUA-CUUAGGU---AAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 48608 0.67 0.999984
Target:  5'- aGUGUAUAGCUUAGaUgUUAAAaGGUg -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 182607 0.67 0.999984
Target:  5'- -aUAUAaGGCUUAGuUUUUAAAGGGUu -3'
miRNA:   3'- acAUAUgUCGAAUCcAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 85095 0.67 0.999984
Target:  5'- ----aAUAGCUUAGGagUUuAGGGGUa -3'
miRNA:   3'- acauaUGUCGAAUCCagAAuUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 164731 0.67 0.999984
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAaGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 81950 0.67 0.999969
Target:  5'- aGUAUAUAGCUUAag---UAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUccagaAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.