miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 162754 0.73 0.990143
Target:  5'- -aUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 162630 0.7 0.999289
Target:  5'- uUGUAUAUAGCUUGGGUgUUAAc---- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUuccca -5'
28250 5' -45.3 NC_005902.1 + 162576 0.77 0.942544
Target:  5'- aGUAUAUAGaUUAGGUgUUAAAGGGc -3'
miRNA:   3'- aCAUAUGUCgAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 162433 0.81 0.791244
Target:  5'- gUGUGUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 159783 0.7 0.998915
Target:  5'- aGUAUAUAGCUaAGua-UUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAaUCcagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 157113 0.69 0.99978
Target:  5'- aGUAUA-AGCuUUAGGaUUUAAAGGGUa -3'
miRNA:   3'- aCAUAUgUCG-AAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 157064 0.71 0.998673
Target:  5'- uUGUGUAUAGCUUAGGUgUUAAc---- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUuccca -5'
28250 5' -45.3 NC_005902.1 + 156829 0.72 0.996656
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 156592 0.67 0.999969
Target:  5'- -aUAUAUAaUUUGGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 156432 0.74 0.98337
Target:  5'- aGUAUAUAGCUUAaaUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 155244 0.8 0.838051
Target:  5'- cGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 154952 0.69 0.999718
Target:  5'- uUGUucAUAGCUUGGGUgUUAAAaGGUg -3'
miRNA:   3'- -ACAuaUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 154877 0.68 0.99987
Target:  5'- aUGUGUuguCAGCauguagAGGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAu--GUCGaa----UCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 154624 0.92 0.301984
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 151227 0.8 0.846797
Target:  5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 149948 0.69 0.999718
Target:  5'- ----cACAcCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acauaUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 149241 0.66 0.999992
Target:  5'- cUGUGUAUAGCUUAaGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 148162 0.71 0.99719
Target:  5'- cUGUaaGUGCAGCgaaugcUAGGaUUUAAAGGGUa -3'
miRNA:   3'- -ACA--UAUGUCGa-----AUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 146943 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 146763 0.81 0.819915
Target:  5'- aGUAUAUacauGGUUUAGGUgUUAGAGGGUa -3'
miRNA:   3'- aCAUAUG----UCGAAUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.