Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28252 | 3' | -42.3 | NC_005902.1 | + | 137740 | 0.66 | 1 |
Target: 5'- aAAGGGUauuuacccuuUAAcACUuAAGCUAUAUAUAa -3' miRNA: 3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 87358 | 0.68 | 1 |
Target: 5'- aAAGGcUUAAUACcuAAGCUAUAUAUAu -3' miRNA: 3'- -UUCCcAAUUAUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 127781 | 0.68 | 1 |
Target: 5'- ----uUUAAcACUGAAGCUAUAUACu -3' miRNA: 3'- uucccAAUUaUGACUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 121612 | 0.68 | 1 |
Target: 5'- gAAGGGUUAAUAUUuAAaUUAUAUACAg -3' miRNA: 3'- -UUCCCAAUUAUGAcUUcGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 67485 | 0.67 | 1 |
Target: 5'- aAAGGGUUA-------AGCUAUGUACAa -3' miRNA: 3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 134211 | 0.68 | 1 |
Target: 5'- aAAGGGUUAAUACaUGuuGUUGUcaAUACc -3' miRNA: 3'- -UUCCCAAUUAUG-ACuuCGAUA--UAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 65689 | 0.68 | 1 |
Target: 5'- aAGGGGUUAAUACUuAAaCUAUAUAa- -3' miRNA: 3'- -UUCCCAAUUAUGAcUUcGAUAUAUgu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 58537 | 0.68 | 1 |
Target: 5'- ----uUUAAcACUGAAGCUAUAUACu -3' miRNA: 3'- uucccAAUUaUGACUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 161622 | 0.68 | 1 |
Target: 5'- gAAGGGUUAGUguuaACUcauaAGGCUGUAUAUu -3' miRNA: 3'- -UUCCCAAUUA----UGAc---UUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 11541 | 0.67 | 1 |
Target: 5'- aAAGGGUUA-------AGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 138824 | 0.67 | 1 |
Target: 5'- aAAGGGUUA-------AGCUAUAUGCAa -3' miRNA: 3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 162803 | 0.67 | 1 |
Target: 5'- aAAGGGUUAAUAUcuAAGCU---UGCAu -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAuauAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 100658 | 0.66 | 1 |
Target: 5'- aAAGGGUauuuacccuuUAAUAUcuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 144988 | 0.66 | 1 |
Target: 5'- ----uUUAAUACUaAAGCUAUAUACAu -3' miRNA: 3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 11395 | 0.66 | 1 |
Target: 5'- aAAGGGUauucacucuuUAAcACUuAAGCUAUAUACu -3' miRNA: 3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 165876 | 0.66 | 1 |
Target: 5'- aAAGGGUgAAUACccuuuaacaccuAAGCUAUAUACGa -3' miRNA: 3'- -UUCCCAaUUAUGac----------UUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 175756 | 0.67 | 1 |
Target: 5'- aAAGG--UAGUACUccAAGCUAUAUACAa -3' miRNA: 3'- -UUCCcaAUUAUGAc-UUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 5176 | 0.67 | 1 |
Target: 5'- aAAGGGUUAAUAUUuAAGCUuuaaAUAaACAu -3' miRNA: 3'- -UUCCCAAUUAUGAcUUCGA----UAUaUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 174998 | 0.67 | 1 |
Target: 5'- ---aGUUAAUACU-AAGCUAUAUACu -3' miRNA: 3'- uuccCAAUUAUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 158123 | 0.67 | 1 |
Target: 5'- ----uUUAAUACUuAAGCUAUAUACAa -3' miRNA: 3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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