miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 31126 0.67 1
Target:  5'- aGUAUAUAGCUUGGaUGUUAAAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 169528 0.68 1
Target:  5'- -cUAUAUAuCUcAGGUGUUAcAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAaUCCACAAUuUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 81324 0.68 1
Target:  5'- aGUAUAUAGCUUAaaaGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUccaCAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 61654 0.67 1
Target:  5'- --aGUAUAGCUUAGaUGUUAAAGaGUu -3'
miRNA:   3'- ccaUAUAUCGAAUCcACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 50084 0.66 1
Target:  5'- uGUAUAUAGCUUAGGUaUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 49036 0.67 1
Target:  5'- --gAUAaAGCUcUAGGaGUUAAGGGGUu -3'
miRNA:   3'- ccaUAUaUCGA-AUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 4815 0.68 1
Target:  5'- aGUAUAUAaCUUAGGaGUUAAAGGc- -3'
miRNA:   3'- cCAUAUAUcGAAUCCaCAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 11071 0.67 1
Target:  5'- uGUAUAUAGCUUAaGUGUUAGAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 93881 0.67 1
Target:  5'- aGUAUAUAGCUUAGuUGUUAAAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 127508 0.67 1
Target:  5'- aGUAUAUAGCUUcaGUGUUAAAGc-- -3'
miRNA:   3'- cCAUAUAUCGAAucCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 183020 0.67 1
Target:  5'- aGUAUAUAGCUUAGaUGUuaauauuuuaaaaacUGAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACA---------------AUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 131053 0.66 1
Target:  5'- ----gAUGcCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- ccauaUAUcGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 44046 0.67 1
Target:  5'- uGUAUAUAGCUUAaaUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 55098 0.67 1
Target:  5'- aGUAUA-AGCuUUAGGauUUAAAGGGUa -3'
miRNA:   3'- cCAUAUaUCG-AAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 157113 0.67 1
Target:  5'- aGUAUA-AGCuUUAGGauUUAAAGGGUa -3'
miRNA:   3'- cCAUAUaUCG-AAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 148784 0.66 1
Target:  5'- uGUAUAUAGCUUAaGUGUUAAGa--- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 118853 0.66 1
Target:  5'- ----gAUGcCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- ccauaUAUcGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 180658 0.66 1
Target:  5'- -aUAUAUAGUUUAGuUGUUAAAaGGUg -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 143940 0.66 1
Target:  5'- ------aAGUUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccauauaUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 111437 0.66 1
Target:  5'- -aUAUAUAGCUUAuauaUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUccacAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.