Results 1 - 20 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 31126 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUUGGaUGUUAAAa--- -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 169528 | 0.68 | 1 |
Target: 5'- -cUAUAUAuCUcAGGUGUUAcAGGGUu -3' miRNA: 3'- ccAUAUAUcGAaUCCACAAUuUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 81324 | 0.68 | 1 |
Target: 5'- aGUAUAUAGCUUAaaaGUUAAAGGa- -3' miRNA: 3'- cCAUAUAUCGAAUccaCAAUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 61654 | 0.67 | 1 |
Target: 5'- --aGUAUAGCUUAGaUGUUAAAGaGUu -3' miRNA: 3'- ccaUAUAUCGAAUCcACAAUUUCcCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 50084 | 0.66 | 1 |
Target: 5'- uGUAUAUAGCUUAGGUaUUAAc---- -3' miRNA: 3'- cCAUAUAUCGAAUCCAcAAUUuccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 49036 | 0.67 | 1 |
Target: 5'- --gAUAaAGCUcUAGGaGUUAAGGGGUu -3' miRNA: 3'- ccaUAUaUCGA-AUCCaCAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 4815 | 0.68 | 1 |
Target: 5'- aGUAUAUAaCUUAGGaGUUAAAGGc- -3' miRNA: 3'- cCAUAUAUcGAAUCCaCAAUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 11071 | 0.67 | 1 |
Target: 5'- uGUAUAUAGCUUAaGUGUUAGAa--- -3' miRNA: 3'- cCAUAUAUCGAAUcCACAAUUUccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 93881 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUUAGuUGUUAAAa--- -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 127508 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUUcaGUGUUAAAGc-- -3' miRNA: 3'- cCAUAUAUCGAAucCACAAUUUCcca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 183020 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUUAGaUGUuaauauuuuaaaaacUGAAGGa- -3' miRNA: 3'- cCAUAUAUCGAAUCcACA---------------AUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 131053 | 0.66 | 1 |
Target: 5'- ----gAUGcCUUAGGgGUUAAAGGGUu -3' miRNA: 3'- ccauaUAUcGAAUCCaCAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 44046 | 0.67 | 1 |
Target: 5'- uGUAUAUAGCUUAaaUGUUAAAGaGUu -3' miRNA: 3'- cCAUAUAUCGAAUccACAAUUUCcCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 55098 | 0.67 | 1 |
Target: 5'- aGUAUA-AGCuUUAGGauUUAAAGGGUa -3' miRNA: 3'- cCAUAUaUCG-AAUCCacAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 157113 | 0.67 | 1 |
Target: 5'- aGUAUA-AGCuUUAGGauUUAAAGGGUa -3' miRNA: 3'- cCAUAUaUCG-AAUCCacAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 148784 | 0.66 | 1 |
Target: 5'- uGUAUAUAGCUUAaGUGUUAAGa--- -3' miRNA: 3'- cCAUAUAUCGAAUcCACAAUUUccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 118853 | 0.66 | 1 |
Target: 5'- ----gAUGcCUUAGGaGUUAAAGGGUa -3' miRNA: 3'- ccauaUAUcGAAUCCaCAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 180658 | 0.66 | 1 |
Target: 5'- -aUAUAUAGUUUAGuUGUUAAAaGGUg -3' miRNA: 3'- ccAUAUAUCGAAUCcACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 143940 | 0.66 | 1 |
Target: 5'- ------aAGUUUAGaUGUUAAAGGGUu -3' miRNA: 3'- ccauauaUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 111437 | 0.66 | 1 |
Target: 5'- -aUAUAUAGCUUAuauaUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUccacAAUUUCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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