miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 156829 0.84 0.812709
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 156592 0.8 0.953531
Target:  5'- -aUAUAUAaUUUGGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 156432 0.85 0.793339
Target:  5'- aGUAUAUAGCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 155244 0.91 0.50154
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 154953 0.78 0.977481
Target:  5'- uGUucAUAGCUUGGGUGUUAAAaGGUg -3'
miRNA:   3'- cCAuaUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 154625 0.93 0.411501
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 153066 0.74 0.997455
Target:  5'- aGUAUAUAGUUUAGGUGUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 151227 0.91 0.512093
Target:  5'- aGUAUAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 149952 0.73 0.999041
Target:  5'- --------cCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccauauaucGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 149879 0.76 0.990802
Target:  5'- -aUAUAUAGCUUAGaUGUUaAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 149242 0.75 0.99497
Target:  5'- uGUGUAUAGCUUAaGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 148784 0.66 1
Target:  5'- uGUAUAUAGCUUAaGUGUUAAGa--- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 146944 0.89 0.57708
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 146763 0.91 0.512093
Target:  5'- aGUAUAUacauGGUUUAGGUGUUAGAGGGUa -3'
miRNA:   3'- cCAUAUA----UCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145976 0.85 0.763023
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145373 0.72 0.999814
Target:  5'- -aUAUAUAGCUUAaacGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUccaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145073 0.93 0.411501
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 144191 0.85 0.793339
Target:  5'- uGUAUAUAGUUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 144059 0.82 0.896412
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAc--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 143940 0.66 1
Target:  5'- ------aAGUUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccauauaUCGAAUCcACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.