miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 76880 0.66 0.999999
Target:  5'- uAUCUAAGCUAUAUauaaaaacaAGUAcuGCAAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG---------UCGUauCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 162543 0.66 0.999999
Target:  5'- cACUUAAGCUAUAUacaacugAGUAUguaAGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA---UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 108911 0.65 0.999999
Target:  5'- -gCUAGGCUAUAUacaaauaAGaGUAGCGAGUGa -3'
miRNA:   3'- ugGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 136247 0.66 0.999999
Target:  5'- uACCcAAGUUAUAUaugaguaGGUAUAGCAAAc- -3'
miRNA:   3'- -UGGaUUCGAUAUG-------UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 12184 0.66 0.999998
Target:  5'- uCCUAAGguUUAUAUaagugAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUUC--GAUAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 90246 0.66 0.999997
Target:  5'- uACUUAAaUUAUAUaaacaAGCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUcGAUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 36323 0.66 0.999997
Target:  5'- uCCUAAgGCuUAUACaagugAGCAUAGUGAAUGa -3'
miRNA:   3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 114362 0.66 0.999997
Target:  5'- cACCUAAGCUAUAUA-CAaauaAGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUa---UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 1154 0.66 0.999996
Target:  5'- gACCUAAGCUGUAUA-CAaacaAGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUa---UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 27888 0.66 0.999996
Target:  5'- uGCCUAAGCUAUAUAuGCAUuuGUu---- -3'
miRNA:   3'- -UGGAUUCGAUAUGU-CGUAu-CGuuuau -5'
28255 5' -44.4 NC_005902.1 + 29282 0.67 0.999995
Target:  5'- aAUCUAAGCcaUAUACAaaCGUAGUAAGUAa -3'
miRNA:   3'- -UGGAUUCG--AUAUGUc-GUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 148249 0.67 0.999992
Target:  5'- cAUUUAAGCUuauAUACaaauaAGCAUAGCAAGc- -3'
miRNA:   3'- -UGGAUUCGA---UAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 28984 0.67 0.999992
Target:  5'- cACCUAAGCUAUACA-CAaa-CGAAUAc -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUaucGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 23419 0.67 0.999992
Target:  5'- cACCcAAGCUAUAUacaaacaAGUAcAGCAAGUGa -3'
miRNA:   3'- -UGGaUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 139573 0.67 0.999992
Target:  5'- cCCUAAgGCUuauAUACaaguaAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGA---UAUG-----UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 90066 0.67 0.999992
Target:  5'- cACCUAAGUUAUAUacaAGUGUAaCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUcGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 142221 0.67 0.999989
Target:  5'- uCCUAAgGCUugcACgAGCAUAGCAAAc- -3'
miRNA:   3'- uGGAUU-CGAua-UG-UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 4782 0.67 0.999988
Target:  5'- cCCUAcGCUAUAUacaaauaAGCAUagugAGCAAGUAu -3'
miRNA:   3'- uGGAUuCGAUAUG-------UCGUA----UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 88303 0.67 0.999984
Target:  5'- cACCUAAGCUAUAU-GCAaauaaauauaUAGCuuAGAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGU----------AUCG--UUUAU- -5'
28255 5' -44.4 NC_005902.1 + 157237 0.67 0.999984
Target:  5'- cACCUAAGCUAUAUA-CAaaagAGCAcaGAUGu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUa---UCGU--UUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.