Results 1 - 20 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 76880 | 0.66 | 0.999999 |
Target: 5'- uAUCUAAGCUAUAUauaaaaacaAGUAcuGCAAGUAa -3' miRNA: 3'- -UGGAUUCGAUAUG---------UCGUauCGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 162543 | 0.66 | 0.999999 |
Target: 5'- cACUUAAGCUAUAUacaacugAGUAUguaAGUAAGUAu -3' miRNA: 3'- -UGGAUUCGAUAUG-------UCGUA---UCGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 108911 | 0.65 | 0.999999 |
Target: 5'- -gCUAGGCUAUAUacaaauaAGaGUAGCGAGUGa -3' miRNA: 3'- ugGAUUCGAUAUG-------UCgUAUCGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 136247 | 0.66 | 0.999999 |
Target: 5'- uACCcAAGUUAUAUaugaguaGGUAUAGCAAAc- -3' miRNA: 3'- -UGGaUUCGAUAUG-------UCGUAUCGUUUau -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 12184 | 0.66 | 0.999998 |
Target: 5'- uCCUAAGguUUAUAUaagugAGCAUAGCAAAc- -3' miRNA: 3'- uGGAUUC--GAUAUG-----UCGUAUCGUUUau -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 90246 | 0.66 | 0.999997 |
Target: 5'- uACUUAAaUUAUAUaaacaAGCAUAGCAAGUGa -3' miRNA: 3'- -UGGAUUcGAUAUG-----UCGUAUCGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 36323 | 0.66 | 0.999997 |
Target: 5'- uCCUAAgGCuUAUACaagugAGCAUAGUGAAUGa -3' miRNA: 3'- uGGAUU-CG-AUAUG-----UCGUAUCGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 114362 | 0.66 | 0.999997 |
Target: 5'- cACCUAAGCUAUAUA-CAaauaAGCAuAUAu -3' miRNA: 3'- -UGGAUUCGAUAUGUcGUa---UCGUuUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 1154 | 0.66 | 0.999996 |
Target: 5'- gACCUAAGCUGUAUA-CAaacaAGCAuAUAu -3' miRNA: 3'- -UGGAUUCGAUAUGUcGUa---UCGUuUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 27888 | 0.66 | 0.999996 |
Target: 5'- uGCCUAAGCUAUAUAuGCAUuuGUu---- -3' miRNA: 3'- -UGGAUUCGAUAUGU-CGUAu-CGuuuau -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 29282 | 0.67 | 0.999995 |
Target: 5'- aAUCUAAGCcaUAUACAaaCGUAGUAAGUAa -3' miRNA: 3'- -UGGAUUCG--AUAUGUc-GUAUCGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 148249 | 0.67 | 0.999992 |
Target: 5'- cAUUUAAGCUuauAUACaaauaAGCAUAGCAAGc- -3' miRNA: 3'- -UGGAUUCGA---UAUG-----UCGUAUCGUUUau -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 28984 | 0.67 | 0.999992 |
Target: 5'- cACCUAAGCUAUACA-CAaa-CGAAUAc -3' miRNA: 3'- -UGGAUUCGAUAUGUcGUaucGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 23419 | 0.67 | 0.999992 |
Target: 5'- cACCcAAGCUAUAUacaaacaAGUAcAGCAAGUGa -3' miRNA: 3'- -UGGaUUCGAUAUG-------UCGUaUCGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 139573 | 0.67 | 0.999992 |
Target: 5'- cCCUAAgGCUuauAUACaaguaAGCAUAGCAAAc- -3' miRNA: 3'- uGGAUU-CGA---UAUG-----UCGUAUCGUUUau -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 90066 | 0.67 | 0.999992 |
Target: 5'- cACCUAAGUUAUAUacaAGUGUAaCAAGUGa -3' miRNA: 3'- -UGGAUUCGAUAUG---UCGUAUcGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 142221 | 0.67 | 0.999989 |
Target: 5'- uCCUAAgGCUugcACgAGCAUAGCAAAc- -3' miRNA: 3'- uGGAUU-CGAua-UG-UCGUAUCGUUUau -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 4782 | 0.67 | 0.999988 |
Target: 5'- cCCUAcGCUAUAUacaaauaAGCAUagugAGCAAGUAu -3' miRNA: 3'- uGGAUuCGAUAUG-------UCGUA----UCGUUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 88303 | 0.67 | 0.999984 |
Target: 5'- cACCUAAGCUAUAU-GCAaauaaauauaUAGCuuAGAUAa -3' miRNA: 3'- -UGGAUUCGAUAUGuCGU----------AUCG--UUUAU- -5' |
|||||||
28255 | 5' | -44.4 | NC_005902.1 | + | 157237 | 0.67 | 0.999984 |
Target: 5'- cACCUAAGCUAUAUA-CAaaagAGCAcaGAUGu -3' miRNA: 3'- -UGGAUUCGAUAUGUcGUa---UCGU--UUAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home