miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28255 5' -44.4 NC_005902.1 + 117738 0.69 0.999864
Target:  5'- cAUCUAAGCUAUAU-GCA-AGUAAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 117012 0.68 0.999923
Target:  5'- uCCUAAGUcuUAUACaAGUgaacGUAGCAAAUAg -3'
miRNA:   3'- uGGAUUCG--AUAUG-UCG----UAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 116959 0.8 0.851202
Target:  5'- uCUUAAGCUAUAUacaaguaAGCAUAGCAAAUGu -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 116891 0.81 0.805719
Target:  5'- uCCUAAGaCUAUACaagugAGCAUAGCAAAUGa -3'
miRNA:   3'- uGGAUUC-GAUAUG-----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 116640 0.69 0.999817
Target:  5'- cACCUAAGCUAUAUacaagugAGUAUaauaAGCAuAUAg -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUA----UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 114362 0.66 0.999997
Target:  5'- cACCUAAGCUAUAUA-CAaauaAGCAuAUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUcGUa---UCGUuUAU- -5'
28255 5' -44.4 NC_005902.1 + 110920 0.78 0.918996
Target:  5'- uACCUAAGCUAUAUaugagugGGUAUAGUAAGUu -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUAUCGUUUAu -5'
28255 5' -44.4 NC_005902.1 + 110876 0.79 0.892361
Target:  5'- uACCUAAGUUAUAUAGCAU-GUggGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGUCGUAuCGuuUAU- -5'
28255 5' -44.4 NC_005902.1 + 109925 0.8 0.860651
Target:  5'- gACCUAAGCUAUAU-GCAaacaUAGCGAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGuCGU----AUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 109367 0.83 0.722196
Target:  5'- cACUUAAGCUAUAUauaAGCAUAGCAAAc- -3'
miRNA:   3'- -UGGAUUCGAUAUG---UCGUAUCGUUUau -5'
28255 5' -44.4 NC_005902.1 + 108911 0.65 0.999999
Target:  5'- -gCUAGGCUAUAUacaaauaAGaGUAGCGAGUGa -3'
miRNA:   3'- ugGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 107150 0.76 0.967258
Target:  5'- cUCUAAGCUAUAUauaaacaAGUGUAGCAAAUGa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 105951 0.7 0.999391
Target:  5'- cACCUAAGCUAUAUAcaaauaaauGCAaugAGUGAGUAu -3'
miRNA:   3'- -UGGAUUCGAUAUGU---------CGUa--UCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 104899 0.75 0.97908
Target:  5'- cCUUAAGUUAUAUauaaacgAGCAUAGCGAGUGa -3'
miRNA:   3'- uGGAUUCGAUAUG-------UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 98948 0.81 0.815418
Target:  5'- cCCUAAGCUAUAUaaugAGUAUAGUAAGUAa -3'
miRNA:   3'- uGGAUUCGAUAUG----UCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 98644 0.81 0.833277
Target:  5'- uACCUAAGCUAUAUacaagugAGCAcAGCGAAUGa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCGUaUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 97184 0.75 0.981462
Target:  5'- cACCUAAGCUAUAUaugaaugAGgAUAGUGAGUAa -3'
miRNA:   3'- -UGGAUUCGAUAUG-------UCgUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 93720 0.73 0.994006
Target:  5'- uACCUAAGCUAUAUagaacaAGUGUAGUAAu-- -3'
miRNA:   3'- -UGGAUUCGAUAUG------UCGUAUCGUUuau -5'
28255 5' -44.4 NC_005902.1 + 93434 0.74 0.987564
Target:  5'- uAUUUAAGCUAUG-AGCAUAGUGAAUAa -3'
miRNA:   3'- -UGGAUUCGAUAUgUCGUAUCGUUUAU- -5'
28255 5' -44.4 NC_005902.1 + 92017 0.79 0.892361
Target:  5'- uACCUAAGCUAUAUAugaguaaaCAUAGCAAGUGa -3'
miRNA:   3'- -UGGAUUCGAUAUGUc-------GUAUCGUUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.