miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 31155 0.66 0.999816
Target:  5'- uACCCUUUAACUCCucuacAUGCugacaacaCAUUAGUg -3'
miRNA:   3'- -UGGGAAAUUGAGG-----UACGca------GUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 154654 0.66 0.999816
Target:  5'- uACCCUUUAACUUUuaagGCaUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 78150 0.66 0.999816
Target:  5'- cAUCCUUUAACUUUAcacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 88763 0.66 0.999816
Target:  5'- aACCCUUUAAUUCUAUauUGUCAaCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 76344 0.66 0.999764
Target:  5'- uACUCUUUAACUCCAcaUGa-UCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGU--ACgcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 15221 0.66 0.999764
Target:  5'- uACCUUUUAACUC---GUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 127399 0.66 0.999699
Target:  5'- aACUCUUUAACUCUuaaGaCGUCAUUGAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 4541 0.66 0.999619
Target:  5'- uACCCUUUAACUUCuaaaGCaUUGUCGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 161772 0.66 0.99952
Target:  5'- aAUCCUUUAACaCCuaagGUGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGaGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 67979 0.66 0.99952
Target:  5'- aAUCCUUUAAUUCCuaaaGUaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 5310 0.67 0.9994
Target:  5'- aAUuuUUUAACUUCuaagGUGUCGUCAAUg -3'
miRNA:   3'- -UGggAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 26428 0.67 0.9994
Target:  5'- aACCCUUUAAUUUCuaagGCaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 50527 0.67 0.999256
Target:  5'- uACCCUUUAACucuUCCAUGCa-CAgCAAUa -3'
miRNA:   3'- -UGGGAAAUUG---AGGUACGcaGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 72467 0.67 0.999256
Target:  5'- uAUCCUUUGAUUCCAUGuUGUUAaUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUaGUUA- -5'
28257 3' -47.8 NC_005902.1 + 167374 0.67 0.999256
Target:  5'- uACCCUUUAACUCUacacuguugccaGUGaCGUagCAUCAu- -3'
miRNA:   3'- -UGGGAAAUUGAGG------------UAC-GCA--GUAGUua -5'
28257 3' -47.8 NC_005902.1 + 116843 0.67 0.999082
Target:  5'- uACCCUUUAACUUCAUa--UCAUUAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAcgcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 48318 0.67 0.999082
Target:  5'- uACCCUUUAAUUCCuuuaugCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGuacgcaGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 137556 0.67 0.999082
Target:  5'- aACUUaUUAACUCCAcGCuGUUAUCAAUa -3'
miRNA:   3'- -UGGGaAAUUGAGGUaCG-CAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 92530 0.67 0.998874
Target:  5'- aACCCccUGACUCCuaaaGUGUCAUUGAc -3'
miRNA:   3'- -UGGGaaAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 54990 0.67 0.998874
Target:  5'- aACCCUUUAACcCCuaagGCaUCAUUAAUa -3'
miRNA:   3'- -UGGGAAAUUGaGGua--CGcAGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.