Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28257 | 3' | -47.8 | NC_005902.1 | + | 31155 | 0.66 | 0.999816 |
Target: 5'- uACCCUUUAACUCCucuacAUGCugacaacaCAUUAGUg -3' miRNA: 3'- -UGGGAAAUUGAGG-----UACGca------GUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 154654 | 0.66 | 0.999816 |
Target: 5'- uACCCUUUAACUUUuaagGCaUUAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 78150 | 0.66 | 0.999816 |
Target: 5'- cAUCCUUUAACUUUAcacUGUCAUCAAc -3' miRNA: 3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 88763 | 0.66 | 0.999816 |
Target: 5'- aACCCUUUAAUUCUAUauUGUCAaCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGUAc-GCAGUaGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 76344 | 0.66 | 0.999764 |
Target: 5'- uACUCUUUAACUCCAcaUGa-UCAUUAAc -3' miRNA: 3'- -UGGGAAAUUGAGGU--ACgcAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 15221 | 0.66 | 0.999764 |
Target: 5'- uACCUUUUAACUC---GUGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGAGguaCGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 127399 | 0.66 | 0.999699 |
Target: 5'- aACUCUUUAACUCUuaaGaCGUCAUUGAc -3' miRNA: 3'- -UGGGAAAUUGAGGua-C-GCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 4541 | 0.66 | 0.999619 |
Target: 5'- uACCCUUUAACUUCuaaaGCaUUGUCGAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 161772 | 0.66 | 0.99952 |
Target: 5'- aAUCCUUUAACaCCuaagGUGUCAUUGAUg -3' miRNA: 3'- -UGGGAAAUUGaGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 67979 | 0.66 | 0.99952 |
Target: 5'- aAUCCUUUAAUUCCuaaaGUaUCAUCAAUa -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 5310 | 0.67 | 0.9994 |
Target: 5'- aAUuuUUUAACUUCuaagGUGUCGUCAAUg -3' miRNA: 3'- -UGggAAAUUGAGGua--CGCAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 26428 | 0.67 | 0.9994 |
Target: 5'- aACCCUUUAAUUUCuaagGCaUUAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 50527 | 0.67 | 0.999256 |
Target: 5'- uACCCUUUAACucuUCCAUGCa-CAgCAAUa -3' miRNA: 3'- -UGGGAAAUUG---AGGUACGcaGUaGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 72467 | 0.67 | 0.999256 |
Target: 5'- uAUCCUUUGAUUCCAUGuUGUUAaUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAC-GCAGUaGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 167374 | 0.67 | 0.999256 |
Target: 5'- uACCCUUUAACUCUacacuguugccaGUGaCGUagCAUCAu- -3' miRNA: 3'- -UGGGAAAUUGAGG------------UAC-GCA--GUAGUua -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 116843 | 0.67 | 0.999082 |
Target: 5'- uACCCUUUAACUUCAUa--UCAUUAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGUAcgcAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 48318 | 0.67 | 0.999082 |
Target: 5'- uACCCUUUAAUUCCuuuaugCAUCAAUg -3' miRNA: 3'- -UGGGAAAUUGAGGuacgcaGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 137556 | 0.67 | 0.999082 |
Target: 5'- aACUUaUUAACUCCAcGCuGUUAUCAAUa -3' miRNA: 3'- -UGGGaAAUUGAGGUaCG-CAGUAGUUA- -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 92530 | 0.67 | 0.998874 |
Target: 5'- aACCCccUGACUCCuaaaGUGUCAUUGAc -3' miRNA: 3'- -UGGGaaAUUGAGGua--CGCAGUAGUUa -5' |
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28257 | 3' | -47.8 | NC_005902.1 | + | 54990 | 0.67 | 0.998874 |
Target: 5'- aACCCUUUAACcCCuaagGCaUCAUUAAUa -3' miRNA: 3'- -UGGGAAAUUGaGGua--CGcAGUAGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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