Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28258 | 3' | -45.6 | NC_005902.1 | + | 42241 | 0.66 | 0.99999 |
Target: 5'- cUUAACACCUaAGCUAUAUacaaaugaguauauaGCUUAg- -3' miRNA: 3'- aAAUUGUGGAcUCGAUAUA---------------CGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 116674 | 0.66 | 0.999989 |
Target: 5'- uUUUAACACCUGaAGCUuAUAUaGUUUAg- -3' miRNA: 3'- -AAAUUGUGGAC-UCGA-UAUA-CGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 109919 | 0.66 | 0.999989 |
Target: 5'- cUUUAAgACCUaAGCUAUAUGCaaaCAUa -3' miRNA: 3'- -AAAUUgUGGAcUCGAUAUACGa--GUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 50115 | 0.66 | 0.999989 |
Target: 5'- -cUAACACCUaAGCUAcauacuuacUGUGCUUGUu -3' miRNA: 3'- aaAUUGUGGAcUCGAU---------AUACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 105267 | 0.66 | 0.999989 |
Target: 5'- cUUUAACACCUaAGCUAUAUacccaCUCAc- -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAc----GAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 162755 | 0.66 | 0.999989 |
Target: 5'- cUUUAACAUUUaAGCUAUAUGCaaGUGu -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUACGagUAC- -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 15310 | 0.66 | 0.999989 |
Target: 5'- aUUAACACCUGAauuaUAUAUGCaauuauUCAUa -3' miRNA: 3'- aAAUUGUGGACUcg--AUAUACG------AGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 22618 | 0.66 | 0.999989 |
Target: 5'- gUUAACACCUaAGCUAUAUauuuaCUCAc- -3' miRNA: 3'- aAAUUGUGGAcUCGAUAUAc----GAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 47186 | 0.66 | 0.999984 |
Target: 5'- cUUUAACACUUaAGCUAUAUaCUCAc- -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 118296 | 0.66 | 0.999978 |
Target: 5'- uUUUAACACUUaAGCUAUAUaCUCAc- -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 156790 | 0.66 | 0.99997 |
Target: 5'- -cUAACACCUaAGCUAUAUaCUUAUu -3' miRNA: 3'- aaAUUGUGGAcUCGAUAUAcGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 128775 | 0.66 | 0.99997 |
Target: 5'- cUUUAACACCUaAGCUAUAUaCUUGUu -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 140870 | 0.67 | 0.999944 |
Target: 5'- cUUUAACAUCUaAGCUGUAUaCUCAa- -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 99623 | 0.67 | 0.999944 |
Target: 5'- aUUAACAUUUaAGCUGUAuaUGCUCAc- -3' miRNA: 3'- aAAUUGUGGAcUCGAUAU--ACGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 23259 | 0.67 | 0.999901 |
Target: 5'- cUUUAACACCUaAGCUAUAUaUUCAc- -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUac -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 156551 | 0.67 | 0.999898 |
Target: 5'- uUUUAACACCUaAGCUAuauauuuacucacUAUGCUUGUu -3' miRNA: 3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 45081 | 0.67 | 0.999898 |
Target: 5'- uUUUAACACCUaAGCUAuauacuuacuugcUAUGCUUGUu -3' miRNA: 3'- -AAAUUGUGGAcUCGAU-------------AUACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 111232 | 0.67 | 0.999869 |
Target: 5'- uUUUAACACCUaAGCUAUAUauacaCUCAUu -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAc----GAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 166130 | 0.67 | 0.999869 |
Target: 5'- cUUUAAUACUUaAGCUAUAuacaUGCUCAUu -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAU----ACGAGUAc -5' |
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28258 | 3' | -45.6 | NC_005902.1 | + | 145948 | 0.68 | 0.999829 |
Target: 5'- cUUUAACAUCUaAGCUAUAUaCUCAUu -3' miRNA: 3'- -AAAUUGUGGAcUCGAUAUAcGAGUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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