miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 170729 0.71 0.999994
Target:  5'- --aAUUgCAUAUAUAaUUCAGGUGUUAa -3'
miRNA:   3'- aagUAA-GUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 162625 0.72 0.999991
Target:  5'- cUUGUUUGUAUAUAGcUUGGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 1292 0.72 0.999991
Target:  5'- -----gUAUAUAUAGcUCAGGUGUUAg -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 162425 0.72 0.999987
Target:  5'- aUUUAUUUguGUGUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAG--UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 28807 0.72 0.999981
Target:  5'- cUCuUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGuAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 137469 0.73 0.999909
Target:  5'- gUUUAUUUGUGUAUAGUUUAGGUaUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 69404 0.73 0.999878
Target:  5'- cUCAcUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUaAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 136278 0.73 0.999878
Target:  5'- -aCAa--AUAUAUAGUUUAGGUGUUGa -3'
miRNA:   3'- aaGUaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 99645 0.73 0.999878
Target:  5'- cUCAcUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUaAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 54367 0.74 0.999839
Target:  5'- cUCAUUUguguAUGUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAG----UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 48610 0.74 0.999789
Target:  5'- ------aAUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 15454 0.74 0.999726
Target:  5'- -----gCAUAUAUAGgUCAGGUGUUAc -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 54077 0.74 0.999726
Target:  5'- -aCAg--AUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaGUaagUAUAUAUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 145969 0.74 0.999646
Target:  5'- cUCAUUCAUAUAUAGcUUAaGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 77177 0.74 0.999646
Target:  5'- cUUAUUUAUAUAUAaUUUAGGUGUUGa -3'
miRNA:   3'- aAGUAAGUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 146938 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 22648 0.75 0.999548
Target:  5'- aUCAUUCAUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 29605 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 39301 0.75 0.999548
Target:  5'- cUUGUUUGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 153066 0.75 0.999548
Target:  5'- ------aGUAUAUAGUUUAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCAAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.