miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 3' -41 NC_005902.1 + 170071 0.68 1
Target:  5'- uCCUUUAAcUCCACAUCaUCAacGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGcAGUaaCUac -5'
28259 3' -41 NC_005902.1 + 106074 0.66 1
Target:  5'- uCCUUUAAcUUCACAcUGUCAUcaacGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUaGCAGUAa---CUAC- -5'
28259 3' -41 NC_005902.1 + 24052 0.7 1
Target:  5'- cCCUUUAAUUCUacgACAUCaUCAaUGAUa -3'
miRNA:   3'- -GGAAAUUAAGG---UGUAGcAGUaACUAc -5'
28259 3' -41 NC_005902.1 + 63168 0.7 1
Target:  5'- cCCUUUAAUUCCuaaggcauCAUCaacaaugcaaaacGUCAUUGAa- -3'
miRNA:   3'- -GGAAAUUAAGGu-------GUAG-------------CAGUAACUac -5'
28259 3' -41 NC_005902.1 + 151101 0.7 1
Target:  5'- cCCUUUAAccCCAUAUUGUUgaUGAUGu -3'
miRNA:   3'- -GGAAAUUaaGGUGUAGCAGuaACUAC- -5'
28259 3' -41 NC_005902.1 + 69243 0.7 1
Target:  5'- cUCUUUAAUUCCAUGUUaUCAUUaacGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGcAGUAA---CUAC- -5'
28259 3' -41 NC_005902.1 + 156975 0.7 1
Target:  5'- --aUUAAcUCCACAUUGUUGcUGAUGa -3'
miRNA:   3'- ggaAAUUaAGGUGUAGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 18697 0.69 1
Target:  5'- cCCUUUAAUUCCuaaagCaUCAUUGAUa -3'
miRNA:   3'- -GGAAAUUAAGGugua-GcAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 159813 0.69 1
Target:  5'- cCCaUUAAcUCUACAccaUCGUCAaUGAUGc -3'
miRNA:   3'- -GGaAAUUaAGGUGU---AGCAGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 103833 0.69 1
Target:  5'- cCCUUUAAcUUUCAaagUGUCAUUGAUa -3'
miRNA:   3'- -GGAAAUU-AAGGUguaGCAGUAACUAc -5'
28259 3' -41 NC_005902.1 + 17713 0.68 1
Target:  5'- cCUUUUAAcUCCACGUUG-CGaUGAUGc -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCaGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 92710 0.66 1
Target:  5'- cCCcUUAAcUUCACAUCGUUGUUaAUGa -3'
miRNA:   3'- -GGaAAUUaAGGUGUAGCAGUAAcUAC- -5'
28259 3' -41 NC_005902.1 + 137834 0.68 1
Target:  5'- uCCUUUAGcUCCuaaggCGUCAUcGAUGa -3'
miRNA:   3'- -GGAAAUUaAGGugua-GCAGUAaCUAC- -5'
28259 3' -41 NC_005902.1 + 110137 0.68 1
Target:  5'- cUCUUUAAUUCCAUGUUauuaUCAaUGAUGc -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGc---AGUaACUAC- -5'
28259 3' -41 NC_005902.1 + 166258 0.68 1
Target:  5'- aCUUUAAUaccUCCAUAUCGacugcgaccagcuacUgGUUGAUGa -3'
miRNA:   3'- gGAAAUUA---AGGUGUAGC---------------AgUAACUAC- -5'
28259 3' -41 NC_005902.1 + 36274 0.67 1
Target:  5'- cUCUUUAAUUUCACAUUGUUGUc---- -3'
miRNA:   3'- -GGAAAUUAAGGUGUAGCAGUAacuac -5'
28259 3' -41 NC_005902.1 + 137960 0.67 1
Target:  5'- aCCUUUAAcUUUAUAUUGUCAaUGAc- -3'
miRNA:   3'- -GGAAAUUaAGGUGUAGCAGUaACUac -5'
28259 3' -41 NC_005902.1 + 16356 0.67 1
Target:  5'- cCUUUUAAUUCg----UGUCAUUGAUGa -3'
miRNA:   3'- -GGAAAUUAAGguguaGCAGUAACUAC- -5'
28259 3' -41 NC_005902.1 + 134642 0.66 1
Target:  5'- cCCUUUAAUUCCuaaugUGUUGUUAaUGAUa -3'
miRNA:   3'- -GGAAAUUAAGGu----GUAGCAGUaACUAc -5'
28259 3' -41 NC_005902.1 + 87303 0.66 1
Target:  5'- --gUUAAcUUCAUAUUGUCAcUGAUGa -3'
miRNA:   3'- ggaAAUUaAGGUGUAGCAGUaACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.