miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28259 5' -44.7 NC_005902.1 + 160966 0.66 0.999999
Target:  5'- uAUCGUCAAcaACGcuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUacUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 152777 0.66 0.999997
Target:  5'- uGUCAUCGAcGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUaCUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 55224 0.66 0.999997
Target:  5'- uGUUAUCGAUGACGccUUAGaAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCcUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 118749 0.66 0.999997
Target:  5'- uAUUAUCAAUaAUGU-UUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcUGCAcAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 33172 0.66 0.999997
Target:  5'- uGUCAUCGAcGAUacuUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUaCUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 82100 0.66 0.999996
Target:  5'- uAUCAUCAAUGAUGcuUUaagaauuaaAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAA---------UCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 74864 0.66 0.999996
Target:  5'- cGUCAUCAAcaACGcaUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUacUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 15968 0.67 0.999994
Target:  5'- uGUCGUUGAUGAUGU----GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCAcaauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 58638 0.67 0.999991
Target:  5'- --uGUCAAUGACGUcUUAaGAGUUAAa -3'
miRNA:   3'- uagUAGUUACUGCAcAAUcCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 127693 0.67 0.99999
Target:  5'- cGUCAUCAAUacuuUGUGUuauugauaacgccuUGGGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUAcu--GCACA--------------AUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 127436 0.67 0.999988
Target:  5'- cAUCAUCAAUGAUGcGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCaCAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 11107 0.67 0.999988
Target:  5'- -aUAUCAAUGAUauuUUAGGAGUUAAu -3'
miRNA:   3'- uaGUAGUUACUGcacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 58191 0.67 0.999988
Target:  5'- cAUCAUCAAUGAUGcGUa--GAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCaCAaucCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 169090 0.67 0.999983
Target:  5'- cGUCGUUGAUGACaGUGU--GGAGUa-- -3'
miRNA:   3'- -UAGUAGUUACUG-CACAauCCUCAauu -5'
28259 5' -44.7 NC_005902.1 + 71716 0.68 0.999976
Target:  5'- cAUCAUCAAUGACGaUGU--GGAaUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC-ACAauCCUcAAUU- -5'
28259 5' -44.7 NC_005902.1 + 12825 0.68 0.999971
Target:  5'- cAUUAUCAAUGACGcuuugucauugaugaUGU--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGC---------------ACAauCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 110284 0.68 0.999967
Target:  5'- uGUCAUUGAUGGUGcuUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUCCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 66970 0.68 0.999967
Target:  5'- cAUCGUUGAUGAUGUGU--GGAGcUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCACAauCCUCaAUU- -5'
28259 5' -44.7 NC_005902.1 + 95546 0.68 0.999955
Target:  5'- cGUCAUCGAUGAUGccUUAaGAGUUAAa -3'
miRNA:   3'- -UAGUAGUUACUGCacAAUcCUCAAUU- -5'
28259 5' -44.7 NC_005902.1 + 8264 0.68 0.999955
Target:  5'- cAUCAUUggUG-CGUG--AGGGGUUAAa -3'
miRNA:   3'- -UAGUAGuuACuGCACaaUCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.