miRNA display CGI


Results 61 - 80 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 177592 0.69 0.999997
Target:  5'- uUUUAACACCUAAaCUAuuauuugaUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAU--------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95408 0.69 0.999995
Target:  5'- cCUUUAACACCUAAaUUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 16890 0.69 0.999995
Target:  5'- uUUUAACAUCUAAGCUAUgaacaaGUGUCUAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUA------UAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 100156 0.7 0.99998
Target:  5'- cCUUUuuAUGCCUAAGUUAUAUACaaguaaaCACa -3'
miRNA:   3'- -GAAAu-UGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 92007 0.7 0.999962
Target:  5'- aCUUUuuaAAUACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -GAAA---UUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 156341 0.7 0.99998
Target:  5'- uUUUAACAUUUAAGCUAUAUAUgaAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 25008 0.7 0.999972
Target:  5'- -cUUAACucuuuAUCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 83736 0.7 0.999972
Target:  5'- uUUUAACACUUAAGUgAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 23833 0.7 0.99998
Target:  5'- aUUUAACAUUUAAGCUAUAUAUa--- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 98940 0.7 0.999962
Target:  5'- cCUUUAACcCCUAAGCUAUAUAa---- -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUgggug -5'
28261 3' -43 NC_005902.1 + 11043 0.7 0.999962
Target:  5'- -gUUAACACUUAAGUUAUAUAUgaUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUG--GGUG- -5'
28261 3' -43 NC_005902.1 + 48224 0.7 0.999972
Target:  5'- cCUUUAACuCUUAAGCUAcauauuUGCUCACu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUau----AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 169979 0.7 0.99998
Target:  5'- -aUUAACccuuuAUCUAAGCUAUAUAUUCAUu -3'
miRNA:   3'- gaAAUUG-----UGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 15479 0.7 0.999986
Target:  5'- -gUUAAUGCUUAAGCUAUAUACa--- -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 26493 0.7 0.999986
Target:  5'- -cUUAACAUCUAAacuGCUAUAUACaaACa -3'
miRNA:   3'- gaAAUUGUGGAUU---CGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 14713 0.7 0.999986
Target:  5'- gUUUAACuuGCUUuuAGCUAUAUACCUAa -3'
miRNA:   3'- gAAAUUG--UGGAu-UCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 174999 0.7 0.999986
Target:  5'- -gUUAAUA-CUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 90609 0.7 0.99999
Target:  5'- -gUUAACACCUAAGCU---UGCUgAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAuauAUGGgUG- -5'
28261 3' -43 NC_005902.1 + 55065 0.7 0.99999
Target:  5'- cCUUUAACACCUAAGUucacuUGUAUAUa-ACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-----AUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 36802 0.7 0.99999
Target:  5'- uUUUAACACUUAAGCUAUA----CACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUauggGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.