Results 81 - 100 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 18859 | 0.87 | 0.68746 |
Target: 5'- uUUUAACACCUAAGCUAUAUACgCu- -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGgGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 11496 | 0.87 | 0.69853 |
Target: 5'- uUUUAAUAUCUAAGCUAUAUACUUACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 81838 | 0.87 | 0.69853 |
Target: 5'- cCUUUAACACCUAAGCUAUAUAaaCAa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 118651 | 0.86 | 0.709533 |
Target: 5'- uUUUAACACUUAAGCUAUAUACaCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 50212 | 0.86 | 0.709533 |
Target: 5'- cCUUUAACACCUAAGCUAUAUAUa-GCu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 98817 | 0.86 | 0.709533 |
Target: 5'- uUUUAACACUUAuGCUAUAUACUCACu -3' miRNA: 3'- gAAAUUGUGGAUuCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 93841 | 0.86 | 0.720457 |
Target: 5'- aUUUAAUACCUAAGCUAUAUACaaACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 184863 | 0.86 | 0.720457 |
Target: 5'- cCUUUAACACCUAAGCUGUAUAUaUGCu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 182566 | 0.86 | 0.720457 |
Target: 5'- uUUUAACACCUAAGCUAUAUACaaAUg -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 105945 | 0.86 | 0.720457 |
Target: 5'- uUUUAACACCUAAGCUAUAUACaaAUa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 21312 | 0.86 | 0.73129 |
Target: 5'- uUUUAACAUCUAAGCUAUAUACUCu- -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 135814 | 0.86 | 0.73129 |
Target: 5'- uCUUUAACACCUAAGCUAUAUAUa-GCu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 172607 | 0.86 | 0.73129 |
Target: 5'- cCUUUAACACUUAAGCUAUAUACUUg- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 122523 | 0.86 | 0.73129 |
Target: 5'- gUUUAACcUCUAGGUUAUAUACCCACu -3' miRNA: 3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 114546 | 0.86 | 0.73129 |
Target: 5'- cCUUUAACACCUAGGCUAUAUAaaCAa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUggGUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 182935 | 0.86 | 0.73129 |
Target: 5'- uUUUAACACCUAAGCUAUAUAUgaACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 11408 | 0.86 | 0.752632 |
Target: 5'- uCUUUAACACUUAAGCUAUAUACUUg- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 15425 | 0.86 | 0.752632 |
Target: 5'- uCUUUAACACCUAAGCUAUAUAUaaAUa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 179812 | 0.86 | 0.752632 |
Target: 5'- cCUUUAACAaCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUgGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 149800 | 0.86 | 0.752632 |
Target: 5'- uUUUAACACCUAAGUUAUGUACUauuCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGG---GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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