Results 1 - 20 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28267 | 3' | -44.5 | NC_005902.1 | + | 86006 | 0.66 | 1 |
Target: 5'- aAUCUUucaauuuuuaaaggaUUAACACCUAAGCUAUa--- -3' miRNA: 3'- gUGGAA---------------AAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 95942 | 0.66 | 0.999999 |
Target: 5'- aUACCcUUUAACACUUAAGUUAUauACu -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 170846 | 0.66 | 0.999999 |
Target: 5'- aUACCcUUUAACAUgUAAGCUAUauACa -3' miRNA: 3'- -GUGGaAAAUUGUGgGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 3360 | 0.66 | 0.999999 |
Target: 5'- cUAUCUUUUAguuuuuaaaggguuACACCUAAGCUAU--ACa -3' miRNA: 3'- -GUGGAAAAU--------------UGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 93427 | 0.66 | 0.999999 |
Target: 5'- -cCCUc--AAUAUUUAAGCUAUGAGCa -3' miRNA: 3'- guGGAaaaUUGUGGGUUCGAUACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 92158 | 0.66 | 0.999999 |
Target: 5'- aAUCUUUUAACAaCUAAGCUAUauACu -3' miRNA: 3'- gUGGAAAAUUGUgGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 158076 | 0.66 | 0.999999 |
Target: 5'- aACCcUUUAAUACCUAcAG-UGUGAACa -3' miRNA: 3'- gUGGaAAAUUGUGGGU-UCgAUACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 37252 | 0.66 | 0.999999 |
Target: 5'- aACUUUaucUUAACACUUAAGCUAUauACa -3' miRNA: 3'- gUGGAA---AAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 110912 | 0.66 | 0.999999 |
Target: 5'- -cCCUUUU-AUACCUAAGCUAuauaUGAGu -3' miRNA: 3'- guGGAAAAuUGUGGGUUCGAU----ACUUg -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 32792 | 0.66 | 0.999999 |
Target: 5'- aACCUUUUAA-ACCCAaauguauuguuGGCUAUGcauuuGCa -3' miRNA: 3'- gUGGAAAAUUgUGGGU-----------UCGAUACu----UG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 118424 | 0.66 | 0.999999 |
Target: 5'- aACUUUUUAaagcuuucaACAUCUAAGCUAuauaaaUGAGCu -3' miRNA: 3'- gUGGAAAAU---------UGUGGGUUCGAU------ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 29607 | 0.66 | 0.999999 |
Target: 5'- uUACCcUUUAACAUUUAAGCUAUauACu -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 135960 | 0.66 | 0.999999 |
Target: 5'- -----gUUAAUACCUAAGCUauauacaaGUGAGCa -3' miRNA: 3'- guggaaAAUUGUGGGUUCGA--------UACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 5997 | 0.66 | 0.999999 |
Target: 5'- aUACuCUUUUAACAaCCGAGCUGUu--- -3' miRNA: 3'- -GUG-GAAAAUUGUgGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 67357 | 0.66 | 0.999999 |
Target: 5'- gUACCUUUUAACAaCUAAGUUAgauACa -3' miRNA: 3'- -GUGGAAAAUUGUgGGUUCGAUacuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 143645 | 0.66 | 0.999999 |
Target: 5'- -----aUUGACACCUAAGCUAUauACu -3' miRNA: 3'- guggaaAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 98937 | 0.66 | 0.999999 |
Target: 5'- aACCcUUUAACcCCUAAGCUAUa--- -3' miRNA: 3'- gUGGaAAAUUGuGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 124388 | 0.66 | 0.999998 |
Target: 5'- aACUcUUUAACAUCUAAGCUAUa--- -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 90057 | 0.66 | 0.999998 |
Target: 5'- aACCc-UUAACACCUAAGUUAUauACa -3' miRNA: 3'- gUGGaaAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 174462 | 0.66 | 0.999998 |
Target: 5'- aAUCUUUUuACAUCUAAGCUAUauACu -3' miRNA: 3'- gUGGAAAAuUGUGGGUUCGAUAcuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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