miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 86006 0.66 1
Target:  5'- aAUCUUucaauuuuuaaaggaUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAA---------------AAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 37252 0.66 0.999999
Target:  5'- aACUUUaucUUAACACUUAAGCUAUauACa -3'
miRNA:   3'- gUGGAA---AAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 3360 0.66 0.999999
Target:  5'- cUAUCUUUUAguuuuuaaaggguuACACCUAAGCUAU--ACa -3'
miRNA:   3'- -GUGGAAAAU--------------UGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 170846 0.66 0.999999
Target:  5'- aUACCcUUUAACAUgUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGgGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 158076 0.66 0.999999
Target:  5'- aACCcUUUAAUACCUAcAG-UGUGAACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGU-UCgAUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 95942 0.66 0.999999
Target:  5'- aUACCcUUUAACACUUAAGUUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 92158 0.66 0.999999
Target:  5'- aAUCUUUUAACAaCUAAGCUAUauACu -3'
miRNA:   3'- gUGGAAAAUUGUgGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 93427 0.66 0.999999
Target:  5'- -cCCUc--AAUAUUUAAGCUAUGAGCa -3'
miRNA:   3'- guGGAaaaUUGUGGGUUCGAUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 110912 0.66 0.999999
Target:  5'- -cCCUUUU-AUACCUAAGCUAuauaUGAGu -3'
miRNA:   3'- guGGAAAAuUGUGGGUUCGAU----ACUUg -5'
28267 3' -44.5 NC_005902.1 + 98937 0.66 0.999999
Target:  5'- aACCcUUUAACcCCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGuGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 118424 0.66 0.999999
Target:  5'- aACUUUUUAaagcuuucaACAUCUAAGCUAuauaaaUGAGCu -3'
miRNA:   3'- gUGGAAAAU---------UGUGGGUUCGAU------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 32792 0.66 0.999999
Target:  5'- aACCUUUUAA-ACCCAaauguauuguuGGCUAUGcauuuGCa -3'
miRNA:   3'- gUGGAAAAUUgUGGGU-----------UCGAUACu----UG- -5'
28267 3' -44.5 NC_005902.1 + 143645 0.66 0.999999
Target:  5'- -----aUUGACACCUAAGCUAUauACu -3'
miRNA:   3'- guggaaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 67357 0.66 0.999999
Target:  5'- gUACCUUUUAACAaCUAAGUUAgauACa -3'
miRNA:   3'- -GUGGAAAAUUGUgGGUUCGAUacuUG- -5'
28267 3' -44.5 NC_005902.1 + 5997 0.66 0.999999
Target:  5'- aUACuCUUUUAACAaCCGAGCUGUu--- -3'
miRNA:   3'- -GUG-GAAAAUUGUgGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 135960 0.66 0.999999
Target:  5'- -----gUUAAUACCUAAGCUauauacaaGUGAGCa -3'
miRNA:   3'- guggaaAAUUGUGGGUUCGA--------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 29607 0.66 0.999999
Target:  5'- uUACCcUUUAACAUUUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 90057 0.66 0.999998
Target:  5'- aACCc-UUAACACCUAAGUUAUauACa -3'
miRNA:   3'- gUGGaaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 124388 0.66 0.999998
Target:  5'- aACUcUUUAACAUCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 50105 0.66 0.999998
Target:  5'- -cCCUUUgauccUAACACCUAAGCUAc---- -3'
miRNA:   3'- guGGAAA-----AUUGUGGGUUCGAUacuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.