miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 154912 0.83 0.776937
Target:  5'- uCAUCUUUUAACAUCCAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 153031 0.68 0.999977
Target:  5'- aACUUUUaAACAUUUAAGCUAUGuACa -3'
miRNA:   3'- gUGGAAAaUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 151286 0.67 0.999992
Target:  5'- aAUCU--UAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAaaAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 151174 0.68 0.999983
Target:  5'- aGCCUUaggaauuaaagggUUAACACCUAAGUUauauauagauguaGUGAAUg -3'
miRNA:   3'- gUGGAA-------------AAUUGUGGGUUCGA-------------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 149799 0.71 0.999096
Target:  5'- ---aUUUUAACACCUAAGUUAUGuACu -3'
miRNA:   3'- guggAAAAUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 149198 0.71 0.999416
Target:  5'- aAUUUUUUAAUACCUAAGCUAUauACu -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 149099 0.67 0.999996
Target:  5'- uUACCUUUUAAC-UCCAGGCUu---ACu -3'
miRNA:   3'- -GUGGAAAAUUGuGGGUUCGAuacuUG- -5'
28267 3' -44.5 NC_005902.1 + 148750 0.75 0.988369
Target:  5'- uUAUCcUUUAACACUUAAGCUAuaUGAACg -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAU--ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 147591 0.72 0.997585
Target:  5'- -uCCUg-UAACACCUAAGCUAuauauaaaUGAGCg -3'
miRNA:   3'- guGGAaaAUUGUGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 146731 0.73 0.995928
Target:  5'- gUAUCcUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 146425 0.71 0.999535
Target:  5'- aAUCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 145944 0.71 0.998887
Target:  5'- aACCcUUUAACAUCUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 145043 0.68 0.999977
Target:  5'- uUAUUcUUUAGCACCUAAGCUauauGUGAGu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGA----UACUUg -5'
28267 3' -44.5 NC_005902.1 + 143771 0.78 0.941011
Target:  5'- aUACCcUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 143645 0.66 0.999999
Target:  5'- -----aUUGACACCUAAGCUAUauACu -3'
miRNA:   3'- guggaaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 143640 0.75 0.980684
Target:  5'- uUACCUUUUAACAUCUAAGUUAUaAAUa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcUUG- -5'
28267 3' -44.5 NC_005902.1 + 143017 0.71 0.998887
Target:  5'- aACCcUUUAACAUCUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 142152 0.76 0.975652
Target:  5'- uCACUcUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 140915 0.7 0.999712
Target:  5'- gGCUUaaucaUAACACCUAAGCUAUauacGAACa -3'
miRNA:   3'- gUGGAaa---AUUGUGGGUUCGAUA----CUUG- -5'
28267 3' -44.5 NC_005902.1 + 140684 0.77 0.959
Target:  5'- aACuCUUUUAACAUCCAAGCUAUaAAUa -3'
miRNA:   3'- gUG-GAAAAUUGUGGGUUCGAUAcUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.