miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 5' -39.6 NC_005902.1 + 161734 0.66 1
Target:  5'- aGAGUGUAUGGCcua-GUGUU-AAAGAg -3'
miRNA:   3'- -CUCAUAUAUCGaaccUACAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 28192 0.67 1
Target:  5'- --aUAUAUAGCUUaGGUGUUAAAuauuGAa -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUu---CU- -5'
28267 5' -39.6 NC_005902.1 + 136001 0.67 1
Target:  5'- -----cAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- cucauaUAUCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 69212 0.67 1
Target:  5'- -uGUAUAUAaCUUaGAUGUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUcGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 148784 0.67 1
Target:  5'- -uGUAUAUAGCUUaaGUGUUAAGAu- -3'
miRNA:   3'- cuCAUAUAUCGAAccUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 145073 0.67 1
Target:  5'- -uGUAUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- cuCAUAUAUCGAAcCUAcAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 11071 0.67 1
Target:  5'- -uGUAUAUAGCUUaaGUGUUAGAAu- -3'
miRNA:   3'- cuCAUAUAUCGAAccUACAAUUUUcu -5'
28267 5' -39.6 NC_005902.1 + 146762 0.68 1
Target:  5'- aAGUAUAUacauGGUUUaGGUGUUAGAGGGu -3'
miRNA:   3'- cUCAUAUA----UCGAAcCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 15341 0.68 1
Target:  5'- --aUAUAUAGCUUaGGUGUU-AAAGAg -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 90094 0.67 1
Target:  5'- uGAGUAUAUAaCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -CUCAUAUAUcGAAccUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 16527 0.67 1
Target:  5'- uGAGaUAUAUAGCUcaGGUGUU-AAAGAg -3'
miRNA:   3'- -CUC-AUAUAUCGAacCUACAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 36941 0.67 1
Target:  5'- uGAGUA---AGCcUGGA-GUUAAAAGGu -3'
miRNA:   3'- -CUCAUauaUCGaACCUaCAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 151330 0.66 1
Target:  5'- --aUAUAUAGUauaGGUGUUAAAAGAa -3'
miRNA:   3'- cucAUAUAUCGaacCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 182967 0.66 1
Target:  5'- --aUAUAUAGCUUaGGUGUUAAAu-- -3'
miRNA:   3'- cucAUAUAUCGAAcCUACAAUUUucu -5'
28267 5' -39.6 NC_005902.1 + 78901 0.66 1
Target:  5'- --aUAUAUAGCUUagaGGGUGgaUAAAAGGu -3'
miRNA:   3'- cucAUAUAUCGAA---CCUACa-AUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 72257 0.66 1
Target:  5'- --aUAUAUAGCUUaGuUGUUAAAGGGu -3'
miRNA:   3'- cucAUAUAUCGAAcCuACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 120290 0.66 1
Target:  5'- --aUAUAUAGUUcaGGUGUUAAAGGAu -3'
miRNA:   3'- cucAUAUAUCGAacCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 44046 0.66 1
Target:  5'- -uGUAUAUAGCUUaaAUGUU-AAAGAg -3'
miRNA:   3'- cuCAUAUAUCGAAccUACAAuUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 84969 0.66 1
Target:  5'- --aUAUAUAGUguaGAUGUUAAAGGGu -3'
miRNA:   3'- cucAUAUAUCGaacCUACAAUUUUCU- -5'
28267 5' -39.6 NC_005902.1 + 44105 0.66 1
Target:  5'- uGAGUAUAUAGUUUaGcUGUU-AAAGAg -3'
miRNA:   3'- -CUCAUAUAUCGAAcCuACAAuUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.