Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28268 | 3' | -42.9 | NC_005902.1 | + | 33085 | 0.67 | 1 |
Target: 5'- --uUUAAAUCCuAAGGCUUAUAUa--- -3' miRNA: 3'- gguAAUUUAGG-UUCCGAGUAUGaaca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 28929 | 0.66 | 1 |
Target: 5'- cCCuUUAAAUCCuaaGCUUAUACUUa- -3' miRNA: 3'- -GGuAAUUUAGGuucCGAGUAUGAAca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 10304 | 0.67 | 1 |
Target: 5'- aCCuuUUAAAUCCuaaaGCUCAuUACUUGUu -3' miRNA: 3'- -GGu-AAUUUAGGuuc-CGAGU-AUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 97500 | 0.68 | 1 |
Target: 5'- -gGUUAAAUCuCAAGGCUUguGUACUc-- -3' miRNA: 3'- ggUAAUUUAG-GUUCCGAG--UAUGAaca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 90543 | 0.68 | 1 |
Target: 5'- uCCuUUGAAUCUuaaaGCUUAUACUUGUu -3' miRNA: 3'- -GGuAAUUUAGGuuc-CGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 173824 | 0.67 | 1 |
Target: 5'- cCCuUUAAAuUCUAAaGCUCAUAUUUGUu -3' miRNA: 3'- -GGuAAUUU-AGGUUcCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 68999 | 0.68 | 0.999999 |
Target: 5'- --uUUAAAUCCuAAGGCUUAUACc--- -3' miRNA: 3'- gguAAUUUAGG-UUCCGAGUAUGaaca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 17640 | 0.69 | 0.999998 |
Target: 5'- cCCuUUAAAccCUAAGGCUUAUACUUa- -3' miRNA: 3'- -GGuAAUUUa-GGUUCCGAGUAUGAAca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 10244 | 0.7 | 0.99999 |
Target: 5'- -gAUUAAAuUCUAAGGCUUAUACUc-- -3' miRNA: 3'- ggUAAUUU-AGGUUCCGAGUAUGAaca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 91164 | 0.7 | 0.999986 |
Target: 5'- gUAUUAAAggguaaaauccUCUAAGGCUUAUACUUa- -3' miRNA: 3'- gGUAAUUU-----------AGGUUCCGAGUAUGAAca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 131072 | 0.7 | 0.999981 |
Target: 5'- -gGUUAAAuUCUAAGGCUUAUACaaGUa -3' miRNA: 3'- ggUAAUUU-AGGUUCCGAGUAUGaaCA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 46256 | 0.71 | 0.999973 |
Target: 5'- cCCuUUAAAUCCuAAGGCUUAUAUa--- -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGaaca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 48456 | 0.71 | 0.999964 |
Target: 5'- --------cCUAAGGCUUAUACUUGUu -3' miRNA: 3'- gguaauuuaGGUUCCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 84873 | 0.71 | 0.999951 |
Target: 5'- uCCAUUAAAUCuUAAGGCUUAaAUgagUGUa -3' miRNA: 3'- -GGUAAUUUAG-GUUCCGAGUaUGa--ACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 166198 | 0.71 | 0.999951 |
Target: 5'- gUAUUGcuuuAAUUCAuaAGGCUUAUACUUGUu -3' miRNA: 3'- gGUAAU----UUAGGU--UCCGAGUAUGAACA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 36317 | 0.72 | 0.999883 |
Target: 5'- --uUUAAAUCCuAAGGCUUAUACaaGUg -3' miRNA: 3'- gguAAUUUAGG-UUCCGAGUAUGaaCA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 133562 | 0.72 | 0.999883 |
Target: 5'- cCCuUUAAAUCCuAGGGCUUAUAUUcGUu -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGAaCA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 122853 | 0.72 | 0.999743 |
Target: 5'- aCCuuUUAAAUCCuAAGGCUUAUAUUUa- -3' miRNA: 3'- -GGu-AAUUUAGG-UUCCGAGUAUGAAca -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 1483 | 0.72 | 0.999743 |
Target: 5'- cCCuUUAAAUCCuAAGGCUUAUAUgaGUa -3' miRNA: 3'- -GGuAAUUUAGG-UUCCGAGUAUGaaCA- -5' |
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28268 | 3' | -42.9 | NC_005902.1 | + | 139015 | 0.72 | 0.999743 |
Target: 5'- --uUUAAAUCuUAAGGUUUAUACUUGUu -3' miRNA: 3'- gguAAUUUAG-GUUCCGAGUAUGAACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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