miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 4815 0.66 1
Target:  5'- aGUAUAUAaCUUAGGaGUUAAAGGc-- -3'
miRNA:   3'- -CAUAUAUcGAAUCCaCAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 81324 0.66 1
Target:  5'- aGUAUAUAGCUUAaaaGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUCGAAUccaCAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 73078 0.67 1
Target:  5'- uGUAUAUuaCUUAuGUGUUAAAGGGuGa -3'
miRNA:   3'- -CAUAUAucGAAUcCACAAUUUCCCuC- -5'
28269 5' -43.2 NC_005902.1 + 114386 0.66 1
Target:  5'- aUAUAUAaCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUcGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 101227 0.67 1
Target:  5'- -cAUAUAGCUUAaGaGUUAAAGGGu- -3'
miRNA:   3'- caUAUAUCGAAUcCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 143680 0.67 1
Target:  5'- uGUAUAUAaUUUAGaUGUUAAAGGGuGa -3'
miRNA:   3'- -CAUAUAUcGAAUCcACAAUUUCCCuC- -5'
28269 5' -43.2 NC_005902.1 + 61654 0.66 1
Target:  5'- -aGUAUAGCUUAGaUGUUAAAGa--- -3'
miRNA:   3'- caUAUAUCGAAUCcACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 36842 0.67 1
Target:  5'- aGUAUAUAGCUUAGGUaUUAAAa---- -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 90279 0.67 1
Target:  5'- aUAUAUAGCUUAaGUGUUAAAaGGu- -3'
miRNA:   3'- cAUAUAUCGAAUcCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 133270 0.66 1
Target:  5'- uUAUAUAaCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- cAUAUAUcGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 44107 0.66 1
Target:  5'- aGUAUAUAGUUUAGcUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 173499 0.66 1
Target:  5'- uGUAUAUAaUUUAGGUaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 133704 0.66 1
Target:  5'- -aAUGUAGCgagugagUAuGUGUUAAAGGGu- -3'
miRNA:   3'- caUAUAUCGa------AUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 85373 0.68 0.999999
Target:  5'- aUAUAUAGCUUAGauaUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCcacAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 26531 0.68 0.999999
Target:  5'- aGUAUAuaaUAGCUUAaaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAU---AUCGAAUccACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 22594 0.68 0.999999
Target:  5'- uUAUAUAGcCUUAGGauUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUC-GAAUCCacAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 63275 0.68 0.999999
Target:  5'- -cAUAUAGCUUAaagGUUAAAGGGu- -3'
miRNA:   3'- caUAUAUCGAAUccaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 145373 0.68 0.999999
Target:  5'- aUAUAUAGCUUAaacGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUccaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 49629 0.68 0.999999
Target:  5'- uUAUAUaAGcCUUAGGgGUUAAAGGGu- -3'
miRNA:   3'- cAUAUA-UC-GAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 92331 0.68 0.999999
Target:  5'- cUAUAUAGCUUAGGU---AAAGGa-- -3'
miRNA:   3'- cAUAUAUCGAAUCCAcaaUUUCCcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.