Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28270 | 3' | -40.4 | NC_005902.1 | + | 103889 | 0.66 | 1 |
Target: 5'- -uUUAAAUCCUAAAGUUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 107376 | 0.7 | 1 |
Target: 5'- -uUUAAAUCCUAGGGCUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 152918 | 0.71 | 1 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 120376 | 0.71 | 1 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 184520 | 0.71 | 1 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 148149 | 0.7 | 1 |
Target: 5'- --cUAAAUCCUAAAGCU---GUAAGUg -3' miRNA: 3'- ucaAUUUGGGAUUUCGAaugUAUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 100280 | 0.71 | 1 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 68999 | 0.71 | 1 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 139746 | 0.71 | 1 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 31283 | 0.7 | 1 |
Target: 5'- aGGUUAAAUCUUAAAGUUUAUAUu--- -3' miRNA: 3'- -UCAAUUUGGGAUUUCGAAUGUAuuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 153131 | 0.69 | 1 |
Target: 5'- uGUUAAucucaGCaCCUAAAGCUU-UAUAGGUa -3' miRNA: 3'- uCAAUU-----UG-GGAUUUCGAAuGUAUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 31221 | 0.69 | 1 |
Target: 5'- gAGUUAAAUCCUAAAGaguugucgaugaugcUUUGCAUAAu- -3' miRNA: 3'- -UCAAUUUGGGAUUUC---------------GAAUGUAUUca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 171092 | 0.66 | 1 |
Target: 5'- ----uAAUCCUAAGGUUUAUAcGAGUg -3' miRNA: 3'- ucaauUUGGGAUUUCGAAUGUaUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 92637 | 0.66 | 1 |
Target: 5'- gGGaUUAAAUCCUAAAGUUUAUAc---- -3' miRNA: 3'- -UC-AAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 115192 | 0.67 | 1 |
Target: 5'- gGGUUAAACCC-AAAGUacACAU-GGUa -3' miRNA: 3'- -UCAAUUUGGGaUUUCGaaUGUAuUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 37027 | 0.67 | 1 |
Target: 5'- -aUUAAAaUCUAAAGCUUAUGUAAGc -3' miRNA: 3'- ucAAUUUgGGAUUUCGAAUGUAUUCa -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 116677 | 0.67 | 1 |
Target: 5'- ----uAACaCCUGAAGCUUAUAUAGu- -3' miRNA: 3'- ucaauUUG-GGAUUUCGAAUGUAUUca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 88823 | 0.67 | 1 |
Target: 5'- aGGaUUAAAUCCUAAAGUUUAUAUu--- -3' miRNA: 3'- -UC-AAUUUGGGAUUUCGAAUGUAuuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 17685 | 0.68 | 1 |
Target: 5'- --aUAAGCCUUAGGGUUUAaaggAUGAGUa -3' miRNA: 3'- ucaAUUUGGGAUUUCGAAUg---UAUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 114376 | 0.68 | 1 |
Target: 5'- gAGUUAaggauuAACCUuucaaaacaUAAAGCUUAUAUAAGc -3' miRNA: 3'- -UCAAU------UUGGG---------AUUUCGAAUGUAUUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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