miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 90126 0.66 1
Target:  5'- aCCCUUUAAUuCUaUAuCGUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 54991 0.66 1
Target:  5'- aCCCUUUAACccCUaagGCAUCAUUAAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 48379 0.66 1
Target:  5'- aCCCUUUAACACcuaaguuaUGUACuuauUCAAUAu -3'
miRNA:   3'- -GGGAAAUUGUG--------ACGUGuaguAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 91308 0.66 1
Target:  5'- aCCUUUUAACACUuaaacuauauacGCAC-UCAUUuguACAu -3'
miRNA:   3'- -GGGAAAUUGUGA------------CGUGuAGUAGu--UGU- -5'
28271 3' -44.5 NC_005902.1 + 87184 0.66 1
Target:  5'- aCCUUUUAACACuuaUGCAUAUaCAaacaagagCAGCAa -3'
miRNA:   3'- -GGGAAAUUGUG---ACGUGUA-GUa-------GUUGU- -5'
28271 3' -44.5 NC_005902.1 + 173729 0.66 1
Target:  5'- aCCCUUUAACuucuuuaUGCACcaauaauacuaacauGUCGUCAGu- -3'
miRNA:   3'- -GGGAAAUUGug-----ACGUG---------------UAGUAGUUgu -5'
28271 3' -44.5 NC_005902.1 + 177271 0.66 1
Target:  5'- aCUCUcaaAGCAUUGUugAcaacUCAUCAACAg -3'
miRNA:   3'- -GGGAaa-UUGUGACGugU----AGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 97112 0.66 1
Target:  5'- aCUUUUUAACua--CACAUCAUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 37871 0.66 1
Target:  5'- aCCCUUUAAauccuagcauuCGCUGCAC-UUA-CAGCu -3'
miRNA:   3'- -GGGAAAUU-----------GUGACGUGuAGUaGUUGu -5'
28271 3' -44.5 NC_005902.1 + 107242 0.66 1
Target:  5'- aCCCUUUAACuCUuaAggUGUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcgU--GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 1580 0.66 1
Target:  5'- ----aUGAUGCUuCACAUCAUUAACAa -3'
miRNA:   3'- gggaaAUUGUGAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 29027 0.66 0.999999
Target:  5'- uUCUUUGACucuaaauauguuACUGaugaugcauuaGCAUCAUCAGCAa -3'
miRNA:   3'- gGGAAAUUG------------UGACg----------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 34906 0.66 0.999999
Target:  5'- aUCUUUUAACuccauAUUGUcaauagacuuuACAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUG-----UGACG-----------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 74841 0.66 0.999999
Target:  5'- uUCCUUaucACAacaaUGUaaaGCGUCAUCAACAa -3'
miRNA:   3'- -GGGAAau-UGUg---ACG---UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 52841 0.66 0.999999
Target:  5'- aUCCUUUAACuccauaccgUUGUuaaugacauaaaACGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu--------GACG------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 87062 0.66 0.999999
Target:  5'- cCCCUUaacuucuaaGGCAUUGUuaaugauacuuuGCAUCAUUAACAa -3'
miRNA:   3'- -GGGAAa--------UUGUGACG------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 162490 0.67 0.999998
Target:  5'- ----aUGGCAUUuUACAUCAUCAACAa -3'
miRNA:   3'- gggaaAUUGUGAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 148303 0.67 0.999998
Target:  5'- aCCCUUUAAUuc--CACAUCuuuAUCAACAc -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAG---UAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 16113 0.67 0.999998
Target:  5'- aCCCUUUAACcCcaaaCACGUCGUCggUg -3'
miRNA:   3'- -GGGAAAUUGuGac--GUGUAGUAGuuGu -5'
28271 3' -44.5 NC_005902.1 + 29538 0.67 0.999997
Target:  5'- aUCCUUUAACuCUuaagGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.