miRNA display CGI


Results 21 - 40 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 139993 0.69 0.999961
Target:  5'- aUCCUUUAACucaaaUGCauugaugauguauuaGCAUUAUCAGCAc -3'
miRNA:   3'- -GGGAAAUUGug---ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 137493 0.78 0.95173
Target:  5'- aCUCUUUAACuCUaUACAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 134326 0.68 0.999983
Target:  5'- aCCCUUUAACAUUuaaGCAUAUacaaAUgAGCAc -3'
miRNA:   3'- -GGGAAAUUGUGA---CGUGUAg---UAgUUGU- -5'
28271 3' -44.5 NC_005902.1 + 131007 0.73 0.997124
Target:  5'- aCCCUUUAAUuccaUGC-UGUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGug--ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 130810 0.71 0.999263
Target:  5'- aCCCUUUAACuuCUaagGCGUCAUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 127845 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCGCAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 127677 0.72 0.999089
Target:  5'- aCCCUUUAACuccauGCGUCAUCAAUAc -3'
miRNA:   3'- -GGGAAAUUGugacgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 120962 0.7 0.999895
Target:  5'- uUCCUUUGGCAgaagGUACaAUCGUUAACAu -3'
miRNA:   3'- -GGGAAAUUGUga--CGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 120438 0.73 0.995961
Target:  5'- aCCCUUUAACuuUaCACAUUAUUAACAc -3'
miRNA:   3'- -GGGAAAUUGugAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 118575 0.7 0.99977
Target:  5'- aCCCUUUAACuuCUaagGCAUCAUUGACAg -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 116844 0.67 0.999996
Target:  5'- aCCCUUUAACuu--CAUAUCAUUAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 114320 0.68 0.999993
Target:  5'- aCCCUUUAAuucCACaucgucauugaugaUGCaacGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUU---GUG--------------ACG---UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 113733 0.71 0.999263
Target:  5'- aCCUUUAACucCUaaaGCAgCAUCAUUAACAa -3'
miRNA:   3'- gGGAAAUUGu-GA---CGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 110249 0.69 0.999967
Target:  5'- aCCCUUUAAUuccaCAUGUCAUUAACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 107242 0.66 1
Target:  5'- aCCCUUUAACuCUuaAggUGUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcgU--GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 106073 0.68 0.999988
Target:  5'- aUCCUUUAACuucaCACuGUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGugacGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 104234 0.68 0.999994
Target:  5'- aUCCUUUAAUucuaUGUA-AUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGUgUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 102205 0.72 0.998632
Target:  5'- aCCCUUUAACucCUaagAUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 97112 0.66 1
Target:  5'- aCUUUUUAACua--CACAUCAUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 95529 0.71 0.999528
Target:  5'- aCCCUUUAACuc--CACAUCGUCAuCGa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUuGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.