miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 153274 0.66 1
Target:  5'- ----gUGAUGAUGUAUGGGa------ -3'
miRNA:   3'- uaauaACUACUACGUACUCaauuucc -5'
28271 5' -39.6 NC_005902.1 + 49920 0.68 1
Target:  5'- cAUUAaUGAUaGUGUG-GAGUUAAAGGa -3'
miRNA:   3'- -UAAUaACUAcUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 29582 0.68 1
Target:  5'- ------aAUGAUGCAUGAaaUUAAAGGa -3'
miRNA:   3'- uaauaacUACUACGUACUc-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 69283 0.68 1
Target:  5'- ------aAUGAUGUuuuagGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 71295 0.69 1
Target:  5'- uAUUAUcaAUGAUGCcuuggGAGUUAGGGGu -3'
miRNA:   3'- -UAAUAacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 159836 0.69 1
Target:  5'- ------aAUGAUGCcuuagGAGUUAAGGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 146132 0.7 1
Target:  5'- ----aUGAUGAUGUAguAGUUGAAGa -3'
miRNA:   3'- uaauaACUACUACGUacUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 133176 0.7 1
Target:  5'- uAUUGUUGAUGAcguuuuaUGuCAUuaacaacgguaugGAGUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACU-------AC-GUA-------------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 169238 0.7 1
Target:  5'- ------aAUGAUGCcuuagGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 90733 0.68 1
Target:  5'- -gUAUUGA--AUGUuagGGGUUAAAGGa -3'
miRNA:   3'- uaAUAACUacUACGua-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 31380 0.68 1
Target:  5'- uAUUGUUGAUaAUGCcuuaaaAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUAcUACGuac---UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 174898 0.67 1
Target:  5'- --cAUUGAUGAUGCAaagcaucaacaacaUGGauUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUACGU--------------ACUc-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 87313 0.66 1
Target:  5'- uAUUGUcacUGAUGAUGCuguguuGUuaaugacaccuuaaGAGUUAAAGGc -3'
miRNA:   3'- -UAAUA---ACUACUACG------UA--------------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 81802 0.66 1
Target:  5'- uAUUGUUGAUGAUuaCAUaGAaUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACUAc-GUA-CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 12306 0.66 1
Target:  5'- -gUAUUauUGGUGCAUaaagaAGUUAAAGGg -3'
miRNA:   3'- uaAUAAcuACUACGUAc----UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 107462 0.67 1
Target:  5'- --cGUUGAUGAUGUcuuaaGAGUUAAGa- -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUUcc -5'
28271 5' -39.6 NC_005902.1 + 114340 0.67 1
Target:  5'- --cAUUGAUGAUGCAacgcaucaucaaUGAcGUguuAGGa -3'
miRNA:   3'- uaaUAACUACUACGU------------ACU-CAauuUCC- -5'
28271 5' -39.6 NC_005902.1 + 28125 0.67 1
Target:  5'- -----cGAUGAcaCAUgGAGUUAAAGGg -3'
miRNA:   3'- uaauaaCUACUacGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 107279 0.67 1
Target:  5'- cAUUGUUGAUaacaAUGCA-GGGUUAAAGc -3'
miRNA:   3'- -UAAUAACUAc---UACGUaCUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 118155 0.67 1
Target:  5'- uAUUAUcGAUGAUGCcuuaaGAGUccAAAGGa -3'
miRNA:   3'- -UAAUAaCUACUACGua---CUCAa-UUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.