miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 154836 0.81 0.788016
Target:  5'- uACCCUUUAAuACCUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 154583 0.73 0.987127
Target:  5'- uAACCCUUU---ACCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAuucUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 150157 0.74 0.983367
Target:  5'- uAACCCUUUAAcACCUAAGgUGUGg-- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCgACAUaug -5'
28273 3' -45.3 NC_005902.1 + 146424 0.66 0.999993
Target:  5'- uAAUCCUUUAAcACCUAAGCUa----- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcauaug -5'
28273 3' -45.3 NC_005902.1 + 146188 0.73 0.991498
Target:  5'- uAACCCUUUAAcACUUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 145943 0.76 0.955727
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 143275 0.71 0.997249
Target:  5'- uACCCUUUAAcAUCUAAGCUaUAUAUa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 143016 0.76 0.955727
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 142238 0.75 0.970391
Target:  5'- uACCUUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 142153 0.73 0.987127
Target:  5'- cACUCUUUAAcACCUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 137771 0.66 0.999986
Target:  5'- uAACUUUUUAAcACCUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 136566 0.76 0.946806
Target:  5'- uAACCCUUUAAcACCUAAGUUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 136300 0.76 0.955727
Target:  5'- uACCCUUUAAcuCCUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcuGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 136043 0.77 0.936775
Target:  5'- aAACCCUUUAAcuCCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 134645 0.84 0.637354
Target:  5'- aAACCCUUUAAuACCUAAGCUGUGa-- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGACAUaug -5'
28273 3' -45.3 NC_005902.1 + 134581 0.67 0.999949
Target:  5'- uAACCCUUUuaacACUUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAuuc-UGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 134404 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 131367 0.73 0.991498
Target:  5'- gAACCC-UUAAuACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGaAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 131316 0.73 0.991498
Target:  5'- uAACCCUUUAAuACUUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 131124 0.69 0.999568
Target:  5'- uACCCUUUAAauCCUAAGCuauaaacaauUGUGUAUa -3'
miRNA:   3'- uUGGGAAAUUcuGGAUUCG----------ACAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.