miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 167459 0.66 1
Target:  5'- -aAUAUAUAaCUUAGGUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUcGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 169528 0.66 1
Target:  5'- --cUAUAUAuCUcAGGUGUUAcAGGGu -3'
miRNA:   3'- uauAUAUGUcGAaUCCACAAUuUCCC- -5'
28273 5' -42.1 NC_005902.1 + 74816 0.68 1
Target:  5'- uUAUAUAUAGCUUAuauaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUccacAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 142206 0.68 1
Target:  5'- uUGUAUAUAGCUUAaaUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUccACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 142144 0.68 1
Target:  5'- -aGUAUAUAGUUUAGcUGUUAAAGa- -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 181436 0.67 1
Target:  5'- -aGUAUAUAaCUUAGGaGUUAAAGGc -3'
miRNA:   3'- uaUAUAUGUcGAAUCCaCAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 92370 0.67 1
Target:  5'- -aGUAUAUAGCUUAGuUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 71961 0.67 1
Target:  5'- -aGUAUGUAGUgUAGGUGUUAAAaGGu -3'
miRNA:   3'- uaUAUAUGUCGaAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 25289 0.67 1
Target:  5'- uAUGUAUcgucaACAacGCuUUAGGaGUUAAAGGGg -3'
miRNA:   3'- -UAUAUA-----UGU--CG-AAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 58743 0.67 1
Target:  5'- -aGUAUAUAGCUUcaGUGUUAAAGc- -3'
miRNA:   3'- uaUAUAUGUCGAAucCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 3231 0.67 1
Target:  5'- -aGUAUAUAGCUUAGaUGUuaauauuuuaaaaacUGAAGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACA---------------AUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 147967 0.66 1
Target:  5'- gAUGUGguUAUAGCUUAGaUGUUAAAGu- -3'
miRNA:   3'- -UAUAU--AUGUCGAAUCcACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 155125 0.66 1
Target:  5'- -aGUAUAUAGCUUGGaUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 81492 0.66 1
Target:  5'- uUGUAUAUAGCUUAGaUGUUAAc--- -3'
miRNA:   3'- uAUAUAUGUCGAAUCcACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 1411 0.66 1
Target:  5'- uUGUAUAUAaCUUAGGUGUUAAc--- -3'
miRNA:   3'- uAUAUAUGUcGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 91518 0.66 1
Target:  5'- -cGUAUAUAGUUUAaGUGUUAAAaGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUcCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 170796 0.66 1
Target:  5'- -cAUAUAUAGgUcAGGUGUUAcAAGGu -3'
miRNA:   3'- uaUAUAUGUCgAaUCCACAAU-UUCCc -5'
28273 5' -42.1 NC_005902.1 + 69278 0.66 1
Target:  5'- -cAUAUuaAGCUUAGGUGUUAAc--- -3'
miRNA:   3'- uaUAUAugUCGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 67403 0.66 1
Target:  5'- --uUAUugAuGcCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- uauAUAugU-C-GAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 47143 0.66 1
Target:  5'- ---cAUAUAGCUUAGGUaUUAAcAGGu -3'
miRNA:   3'- uauaUAUGUCGAAUCCAcAAUU-UCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.