miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 102185 0.66 1
Target:  5'- uCAUUAUCAAUGACGauuUAGGaGUa-- -3'
miRNA:   3'- cGUAGUAGUUACUGUgu-AUCC-CAauu -5'
28274 5' -44.3 NC_005902.1 + 166292 0.66 1
Target:  5'- aCAUUGUUAAUGACAUcuuagaaGUuaaAGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUG-------UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 181377 0.66 1
Target:  5'- ---cUAUCAGUGGCACGUuuGGaGUUAAc -3'
miRNA:   3'- cguaGUAGUUACUGUGUAu-CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 25084 0.66 1
Target:  5'- aGCGUUGUUGAcGAUACAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUaCUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149869 0.66 1
Target:  5'- aCAUCGUUGAUGACAaUGUAGaGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 111050 0.66 0.999999
Target:  5'- aUAUCAUUAAUGACAUgauuuaaAGGGUa-- -3'
miRNA:   3'- cGUAGUAGUUACUGUGua-----UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 51392 0.67 0.999999
Target:  5'- uGUAUCAUUAAcaACACAUuaggaauuaaAGGGUUAAu -3'
miRNA:   3'- -CGUAGUAGUUacUGUGUA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 165911 0.66 0.999999
Target:  5'- aGUAUCAUCAAUGAUGugaaGUuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUg---UA---UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 136763 0.66 0.999999
Target:  5'- aGUGUUGUCAAUGACACAUcuuaugaguuugAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA------------UCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 42363 0.67 0.999999
Target:  5'- aUAUUGUCAAUGACAUGUuuGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAu-CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 19672 0.67 0.999999
Target:  5'- aGCGUCAuUCGAcuUGGaaaaGCAUGuGGGUUAAu -3'
miRNA:   3'- -CGUAGU-AGUU--ACUg---UGUAU-CCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 37536 0.66 0.999999
Target:  5'- uGUGUUAUUGAUGACaACAUGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 162184 0.66 0.999999
Target:  5'- aCAUCAUCAAUGAUACuauGuGUUAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGuauCcCAAUu -5'
28274 5' -44.3 NC_005902.1 + 25418 0.66 0.999999
Target:  5'- gGCGUUGUCAAUGACACAaAGu----- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCccaauu -5'
28274 5' -44.3 NC_005902.1 + 45244 0.67 0.999998
Target:  5'- aCAUUAUCAAUGACACuuuaucaucaAUgcugccuuaaguuaaAGGGUUAu -3'
miRNA:   3'- cGUAGUAGUUACUGUG----------UA---------------UCCCAAUu -5'
28274 5' -44.3 NC_005902.1 + 81590 0.67 0.999998
Target:  5'- aGUGUUAUCGAUGAUACuuuguGGuGUUGAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGuau--CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 29245 0.67 0.999998
Target:  5'- uGCAUCAUCAGUaACAUauuuagagucaaagaAUuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUAcUGUG---------------UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 16820 0.67 0.999998
Target:  5'- gGCAUCAUUGAUGACACAa-------- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaucccaauu -5'
28274 5' -44.3 NC_005902.1 + 20200 0.67 0.999998
Target:  5'- -uGUUAUCAAUGAUGCcuUAGGaGUUAAc -3'
miRNA:   3'- cgUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 85439 0.67 0.999998
Target:  5'- uGUAUCAUCAAUGAUAcCAUAaaaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUcc-CAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.