Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28275 | 5' | -44 | NC_005902.1 | + | 11419 | 0.66 | 1 |
Target: 5'- cUCUUAAGGCAUCAUcaaUGAcauaaagcaucaacAAUGUGg- -3' miRNA: 3'- -AGGAUUCCGUAGUA---ACUa-------------UUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 83913 | 0.66 | 1 |
Target: 5'- aCCUuuuaacccaGCAUCAUUGAUAAUGUu-- -3' miRNA: 3'- aGGAuuc------CGUAGUAACUAUUACAcaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 95881 | 0.66 | 1 |
Target: 5'- cUCCUAAGGCAUUAUcaacaacacuuUGUGUc -3' miRNA: 3'- -AGGAUUCCGUAGUAacuauu-----ACACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 94665 | 0.66 | 0.999999 |
Target: 5'- cUCCUAAGGCAUUGUcuauaacacaaaauaUcacuagcGAUAAUGUGa- -3' miRNA: 3'- -AGGAUUCCGUAGUA---------------A-------CUAUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 122658 | 0.66 | 0.999999 |
Target: 5'- uUCUUAAGGUAUCAUUaAUGAcacaaaGUGUUg -3' miRNA: 3'- -AGGAUUCCGUAGUAAcUAUUa-----CACAA- -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 58610 | 0.67 | 0.999998 |
Target: 5'- cUCUAc-GCAUCAUUGAUGAugcuuUGUGUg -3' miRNA: 3'- aGGAUucCGUAGUAACUAUU-----ACACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 175947 | 0.67 | 0.999998 |
Target: 5'- cUCCUAAGGUAUCAUcaacaaugcuuUGug---GUGUUg -3' miRNA: 3'- -AGGAUUCCGUAGUA-----------ACuauuaCACAA- -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 58397 | 0.67 | 0.999998 |
Target: 5'- cUCUAc-GCAUCAUUGAUGAugcuuUGUGUg -3' miRNA: 3'- aGGAUucCGUAGUAACUAUU-----ACACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 150145 | 0.67 | 0.999998 |
Target: 5'- aCCUAAGGUGUgGUUGAUGAc----- -3' miRNA: 3'- aGGAUUCCGUAgUAACUAUUacacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 16302 | 0.67 | 0.999998 |
Target: 5'- cUCCUAAGGCAUCAUUa---------- -3' miRNA: 3'- -AGGAUUCCGUAGUAAcuauuacacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 110219 | 0.67 | 0.999998 |
Target: 5'- cUCCUAAGGUAUUAUcaAUAAugcuuUGUGUUa -3' miRNA: 3'- -AGGAUUCCGUAGUAacUAUU-----ACACAA- -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 118745 | 0.67 | 0.999998 |
Target: 5'- cUUUAAGGCAUCAUcGAUGAUaUGa- -3' miRNA: 3'- aGGAUUCCGUAGUAaCUAUUAcACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 67417 | 0.67 | 0.999996 |
Target: 5'- cUCCUAAGGCAUUGUUauUGAUGc--- -3' miRNA: 3'- -AGGAUUCCGUAGUAAcuAUUACacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 55001 | 0.67 | 0.999995 |
Target: 5'- cCCUAAGGCAUCAUUaAUAAc----- -3' miRNA: 3'- aGGAUUCCGUAGUAAcUAUUacacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 123075 | 0.68 | 0.999992 |
Target: 5'- uUCCUAAGGCAUCAucaacaaUgcaaaacgucauUGAaAGUGUGg- -3' miRNA: 3'- -AGGAUUCCGUAGU-------A------------ACUaUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 101976 | 0.68 | 0.999989 |
Target: 5'- cUCCUAAauCGUCAUUGAUAAUGa--- -3' miRNA: 3'- -AGGAUUccGUAGUAACUAUUACacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 142325 | 0.68 | 0.999989 |
Target: 5'- aCCUAAaGCAUCAUcgaUGAcAAUGUGg- -3' miRNA: 3'- aGGAUUcCGUAGUA---ACUaUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 53084 | 0.68 | 0.999989 |
Target: 5'- cUCUUAAGGUAUUGUUGAUGAcGUu-- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUaCAcaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 168319 | 0.68 | 0.999988 |
Target: 5'- uUCCUAAGGCAUCAUcgcaac-GUGg- -3' miRNA: 3'- -AGGAUUCCGUAGUAacuauuaCACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 82621 | 0.68 | 0.999985 |
Target: 5'- cUCCUAAGaUAUUAUUGAUGugGUGUUa -3' miRNA: 3'- -AGGAUUCcGUAGUAACUAUuaCACAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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